dbcls/spang

SPARQL client implementation in Perl

spang's Issues

Can't locate LWP/UserAgent.pm in @INC

I got this error in the latest perl Docker image.

root@1171278df483:~# perl --version

This is perl 5, version 28, subversion 0 (v5.28.0) built for x86_64-linux-gnu

Copyright 1987-2018, Larry Wall

Perl may be copied only under the terms of either the Artistic License or the
GNU General Public License, which may be found in the Perl 5 source kit.

Complete documentation for Perl, including FAQ lists, should be found on
this system using "man perl" or "perldoc perl".  If you have access to the
Internet, point your browser at http://www.perl.org/, the Perl Home Page.

root@1171278df483:~# ./spang-0.4.5/bin/spang
Can't locate LWP/UserAgent.pm in @INC (you may need to install the LWP::UserAgent module) (@INC contains: /root/spang-0.4.5/pm /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.24.1 /usr/local/share/perl/5.24.1 /usr/lib/x86_64-linux-gnu/perl5/5.24 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.24 /usr/share/perl/5.24 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base) at /root/spang-0.4.5/pm/SPANG/Querying.pm line 8.
BEGIN failed--compilation aborted at /root/spang-0.4.5/pm/SPANG/Querying.pm line 8.
Compilation failed in require at ./spang-0.4.5/bin/spang line 19.
BEGIN failed--compilation aborted at ./spang-0.4.5/bin/spang line 19.
root@1171278df483:~#

301 Moved Permanently

Uniprot examples returns 301 Moved Permanently

Please check

root@c3edde195308:~# ./spang-0.4.5/bin/spang uniprot -S tax:511145
301 Moved Permanently
root@c3edde195308:~# ./spang-0.4.5/bin/spang uniprot -S tax:511145 -a
301 Moved Permanently
root@c3edde195308:~# ./spang-0.4.5/bin/spang uniprot -S tax:511145 -q
FORMAT  -f tsv
DB      http://sparql.uniprot.org
SPARQL  SHORTCUT
--
PREFIX tax: <http://purl.uniprot.org/taxonomy/>

SELECT ?p ?o
WHERE {
    tax:511145 ?p ?o
}

root@c3edde195308:~# ./spang-0.4.5/bin/spang uniprot -S tax:511145 -f rdfxml
301 Moved Permanently
root@c3edde195308:~# ./spang-0.4.5/bin/spang uniprot -S tax:511145 -P up:otherName
301 Moved Permanently
root@c3edde195308:~# ./spang-0.4.5/bin/spang uniprot -S tax:511145 -P rdfs:subClassOf+/up:scientificName
301 Moved Permanently
root@c3edde195308:~# ./spang-0.4.5/bin/spang uniprot -P a -O up:Protein -N
301 Moved Permanently
root@c3edde195308:~# ./spang-0.4.5/bin/spang uniprot taxtree_ancestor 511145 -vac
301 Moved Permanently
root@c3edde195308:~# ./spang-0.4.5/bin/spang uniprot taxtree_ancestor 511145 -f json
301 Moved Permanently