deepphe / deepphe-cr-release Goto Github PK
View Code? Open in Web Editor NEWPublic release of the Deep Phenotype Extraction for Cancer Registries project.
License: Apache License 2.0
Public release of the Deep Phenotype Extraction for Cancer Registries project.
License: Apache License 2.0
Tried to follow instructions for starting DeepPhe-CR. Difficulties ensue.
Environment: Mac OS 12.4, Docker desktop 4.10.1, Engine 20.10.17.
Symptoms:
run build,
docker-compose up -d, and
docker-compose logs -f --tail="all"
get the following logs. Port 80 doesn't seem to respond...
| 2022-07-25 13:18:01.261 INFO 8 --- [ main] o.s.b.web.embedded.jetty.JettyWebServer : Jetty started on port(s) 8080 (http/1.1) with context path '/'
dphe-stream | 2022-07-25 13:18:01.277 INFO 8 --- [ main] o.h.d.stream.rest.StreamRestApplication : Started StreamRestApplication in 17.982 seconds (JVM running for 18.462)
dphe-stream-nginx exited with code 1
dphe-stream-nginx | Starting dphe-stream-nginx container with the same host user UID: 1000 and GID: 1000
dphe-stream-nginx | nginx: [emerg] open() "/etc/nginx/nginx.conf" failed (13: Permission denied)
dphe-stream-nginx | Starting dphe-stream-nginx container with the same host user UID: 1000 and GID: 1000
dphe-stream-nginx | nginx: [emerg] open() "/etc/nginx/nginx.conf" failed (13: Permission denied)
dphe-stream-nginx | Starting dphe-stream-nginx container with the same host user UID: 1000 and GID: 1000
dphe-stream-nginx | nginx: [emerg] open() "/etc/nginx/nginx.conf" failed (13: Permission denied)
dphe-stream-nginx | Starting dphe-stream-nginx container with the same host user UID: 1000 and GID: 1000
dphe-stream-nginx | nginx: [emerg] open() "/etc/nginx/nginx.conf" failed (13: Permission denied)
dphe-stream-nginx | Starting dphe-stream-nginx container with the same host user UID: 1000 and GID: 1000
dphe-stream-nginx | nginx: [emerg] open() "/etc/nginx/nginx.conf" failed (13: Permission denied)
dphe-stream-nginx | Starting dphe-stream-nginx container with the same host user UID: 1000 and GID: 1000
dphe-stream-nginx | nginx: [emerg] open() "/etc/nginx/nginx.conf" failed (13: Permission denied)
dphe-stream-nginx | Starting dphe-stream-nginx container with the same host user UID: 1000 and GID: 1000
dphe-stream-nginx | nginx: [emerg] open() "/etc/nginx/nginx.conf" failed (13: Permission denied)
dphe-stream-nginx | Starting dphe-stream-nginx container with the same host user UID: 1000 and GID: 1000
dphe-stream-nginx | nginx: [emerg] open() "/etc/nginx/nginx.conf" failed (13: Permission denied)
dphe-stream-nginx | Starting dphe-stream-nginx container with the same host user UID: 1000 and GID: 1000
dphe-stream-nginx | nginx: [emerg] open() "/etc/nginx/nginx.conf" failed (13: Permission denied)
dphe-stream-nginx | Starting dphe-stream-nginx container with the same host user UID: 1000 and GID: 1000
dphe-stream-nginx | nginx: [emerg] open() "/etc/nginx/nginx.conf" failed (13: Permission denied)
dphe-stream-nginx | Starting dphe-stream-nginx container with the same host user UID: 1000 and GID: 1000
dphe-stream-nginx | nginx: [emerg] open() "/etc/nginx/nginx.conf" failed (13: Permission denied)
dphe-stream-nginx exited with code 1
dphe-stream-nginx | Starting dphe-stream-nginx container with the same host user UID: 1000 and GID: 1000
dphe-stream-nginx | nginx: [emerg] open() "/etc/nginx/nginx.conf" failed (13: Permission denied)
dphe-stream-nginx | Starting dphe-stream-nginx container with the same host user UID: 1000 and GID: 1000
dphe-stream-nginx | nginx: [emerg] open() "/etc/nginx/nginx.conf" failed (13: Permission denied)
dphe-stream-nginx | Starting dphe-stream-nginx container with the same host user UID: 1000 and GID: 1000
dphe-stream-nginx | nginx: [emerg] open() "/etc/nginx/nginx.conf" failed (13: Permission denied)
dphe-stream-nginx | Starting dphe-stream-nginx container with the same host user UID: 1000 and GID: 1000
dphe-stream-nginx | nginx: [emerg] open() "/etc/nginx/nginx.conf" failed (13: Permission denied)
dphe-stream-nginx | Starting dphe-stream-nginx container with the same host user UID: 1000 and GID: 1000
dphe-stream-nginx | nginx: [emerg] open() "/etc/nginx/nginx.conf" failed (13: Permission denied)
dphe-stream-nginx | Starting dphe-stream-nginx container with the same host user UID: 1000 and GID: 1000
dphe-stream-nginx | nginx: [emerg] open() "/etc/nginx/nginx.conf" failed (13: Permission denied)
dphe-stream-nginx | Starting dphe-stream-nginx container with the same host user UID: 1000 and GID: 1000
dphe-stream-nginx | nginx: [emerg] open() "/etc/nginx/nginx.conf" failed (13: Permission denied)
dphe-stream-nginx | Starting dphe-stream-nginx container with the same host user UID: 1000 and GID: 1000
dphe-stream-nginx | nginx: [emerg] open() "/etc/nginx/nginx.conf" failed (13: Permission denied)
dphe-stream-nginx | Starting dphe-stream-nginx container with the same host user UID: 1000 and GID: 1000
dphe-stream-nginx | nginx: [emerg] open() "/etc/nginx/nginx.conf" failed (13: Permission denied)
dphe-stream-nginx | Starting dphe-stream-nginx container with the same host user UID: 1000 and GID: 1000
dphe-stream-nginx | nginx: [emerg] open() "/etc/nginx/nginx.conf" failed (13: Permission denied)
dphe-stream-nginx | Starting dphe-stream-nginx container with the same host user UID: 1000 and GID: 1000
dphe-stream-nginx | nginx: [emerg] open() "/etc/nginx/nginx.conf" failed (13: Permission denied)
dphe-stream-nginx | Starting dphe-stream-nginx container with the same host user UID: 1000 and GID: 1000
dphe-stream-nginx | nginx: [emerg] open() "/etc/nginx/nginx.conf" failed (13: Permission denied)
dphe-stream-nginx exited with code 1
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