This repository includes besides histoCAT scripts:
MIBI.ilp
--> Ilastik classifier trained on MIBI data to create three output classes (Nuclei, Cytoplasm and Background) for CellProfiler
MIBI.cpproj
--> CellProfiler project to segment the probability outputs from MIBI.ilp
MIBI_AB_LIST.csv
--> Antibody list for the corresponding MIBI project