dhtc Goto Github PK

qvalue

Converts p-values in q-values, see (Storey and Tibshirani, 2003)

rapids-single-cell-examples

Examples of single-cell genomic analysis accelerated with RAPIDS

regnet

Nonrigid image registration using multi-scale 3D convolutional neural networks

resnetgpt

用Resnet101+GPT搭建一个玩王者荣耀的AI

rk

The remote Jupyter kernel/kernels administration utility

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

roifile

Read and write ImageJ ROI format. Forked from https://pypi.org/project/roifile

roizer

MATLAB TOOLBOX FOR AUTOMATIC IMAGE SEGMENTATION

rstudio-server-conda

Run Rstudio Server in a conda environment

sampleqc

Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data

saveastiff

Matlab function to save multipage TIFF images to a single file.

sc-type

sc.meb

scanorama

Panoramic stitching of single cell data

scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

scatterpie

Scatter plot with pie chart markers using matplotlib in Python.

scgate

marker-based purification of cell types from single-cell RNA-seq datasets

scillus

R Package for Single-Cell Dataset Processing and Visualization

scmatch

scMatch: a single-cell gene expression profile annotation tool using reference datasets

scpred

R package for cell type prediction based on SVD and ML approaches

scrattch.io

Functions for handling RNA-seq files and formats as input and output for scrattch functions.

script

some useful utils

scripts

Scripts developped over time

scrna-seq-workshop-fall-2019

Harvard FAS informatics scRNAseq workshop website

seedir

A Python package for creating, editing, and reading folder tree diagrams

segment-anything

The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.

seqfish-plus

seqfish_design

Code to design seqfish experiments.

seriation

Infrastructure for Ordering using Seriation - R Package

seurat

R toolkit for single cell genomics