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Multi-threaded application that searches for hairpin structures in cDNA / mRNA sequences (FASTA or GenBank) with specific consensus sequences in the loop.
License: GNU General Public License v3.0
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Describe the bug
When the file is larger than 30/40 MB the process fails.
To Reproduce
Open a FASTA file with a size > 40MB
Expected behavior
Is expected to fail when the progress is close to 50% or more.
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Ushuffle is generating the same shuffled sequence