I'm trying to install some libraries on top of the python:3 image but it isn't working due to some missing libraries, e.g. openblas, mkl, vml, guide, lapack.
Maybe they have been removed during the purge. Any ideas on how to solve it other than reinstalling them by hand?
$ docker run -it python:3 bash
Unable to find image 'python:3' locally
3: Pulling from library/python
Digest: sha256:d4e91d39a14154f5d5cb33048e3a8f03d3316e1acf585383519bd89a0611d3d7
Status: Downloaded newer image for python:3
root@3b9e3eb5d1d6:/# pip install scipy
Collecting scipy
Downloading scipy-0.17.0.tar.gz (12.4MB)
100% |████████████████████████████████| 12.4MB 37kB/s
Collecting numpy>=1.6.2 (from scipy)
Downloading numpy-1.10.4.tar.gz (4.1MB)
100% |████████████████████████████████| 4.1MB 118kB/s
Installing collected packages: numpy, scipy
Running setup.py install for numpy
Running setup.py install for scipy
Complete output from command /usr/local/bin/python3.5 -c "import setuptools, tokenize;__file__='/tmp/pip-build-e9cx2_9t/scipy/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-gxr2_g9y-record/install-record.txt --single-version-externally-managed --compile:
lapack_opt_info:
openblas_lapack_info:
libraries openblas not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
lapack_mkl_info:
mkl_info:
libraries mkl,vml,guide not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
NOT AVAILABLE
atlas_3_10_threads_info:
Setting PTATLAS=ATLAS
libraries tatlas,tatlas not found in /usr/local/lib
libraries lapack_atlas not found in /usr/local/lib
libraries tatlas,tatlas not found in /usr/lib
libraries lapack_atlas not found in /usr/lib
libraries tatlas,tatlas not found in /usr/lib/x86_64-linux-gnu
libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
<class 'numpy.distutils.system_info.atlas_3_10_threads_info'>
NOT AVAILABLE
atlas_3_10_info:
libraries satlas,satlas not found in /usr/local/lib
libraries lapack_atlas not found in /usr/local/lib
libraries satlas,satlas not found in /usr/lib
libraries lapack_atlas not found in /usr/lib
libraries satlas,satlas not found in /usr/lib/x86_64-linux-gnu
libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
<class 'numpy.distutils.system_info.atlas_3_10_info'>
NOT AVAILABLE
atlas_threads_info:
Setting PTATLAS=ATLAS
libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
libraries lapack_atlas not found in /usr/local/lib
libraries ptf77blas,ptcblas,atlas not found in /usr/lib
libraries lapack_atlas not found in /usr/lib
libraries ptf77blas,ptcblas,atlas not found in /usr/lib/x86_64-linux-gnu
libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
<class 'numpy.distutils.system_info.atlas_threads_info'>
NOT AVAILABLE
atlas_info:
libraries f77blas,cblas,atlas not found in /usr/local/lib
libraries lapack_atlas not found in /usr/local/lib
libraries f77blas,cblas,atlas not found in /usr/lib
libraries lapack_atlas not found in /usr/lib
libraries f77blas,cblas,atlas not found in /usr/lib/x86_64-linux-gnu
libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
<class 'numpy.distutils.system_info.atlas_info'>
NOT AVAILABLE
lapack_info:
libraries lapack not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
lapack_src_info:
NOT AVAILABLE
NOT AVAILABLE
/usr/local/lib/python3.5/site-packages/numpy/distutils/system_info.py:1552: UserWarning:
Atlas (http://math-atlas.sourceforge.net/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [atlas]) or by setting
the ATLAS environment variable.
warnings.warn(AtlasNotFoundError.__doc__)
/usr/local/lib/python3.5/site-packages/numpy/distutils/system_info.py:1563: UserWarning:
Lapack (http://www.netlib.org/lapack/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [lapack]) or by setting
the LAPACK environment variable.
warnings.warn(LapackNotFoundError.__doc__)
/usr/local/lib/python3.5/site-packages/numpy/distutils/system_info.py:1566: UserWarning:
Lapack (http://www.netlib.org/lapack/) sources not found.
Directories to search for the sources can be specified in the
numpy/distutils/site.cfg file (section [lapack_src]) or by setting
the LAPACK_SRC environment variable.
warnings.warn(LapackSrcNotFoundError.__doc__)
Running from scipy source directory.
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-build-e9cx2_9t/scipy/setup.py", line 265, in <module>
setup_package()
File "/tmp/pip-build-e9cx2_9t/scipy/setup.py", line 262, in setup_package
setup(**metadata)
File "/usr/local/lib/python3.5/site-packages/numpy/distutils/core.py", line 135, in setup
config = configuration()
File "/tmp/pip-build-e9cx2_9t/scipy/setup.py", line 182, in configuration
config.add_subpackage('scipy')
File "/usr/local/lib/python3.5/site-packages/numpy/distutils/misc_util.py", line 1002, in add_subpackage
caller_level = 2)
File "/usr/local/lib/python3.5/site-packages/numpy/distutils/misc_util.py", line 971, in get_subpackage
caller_level = caller_level + 1)
File "/usr/local/lib/python3.5/site-packages/numpy/distutils/misc_util.py", line 908, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "scipy/setup.py", line 15, in configuration
config.add_subpackage('linalg')
File "/usr/local/lib/python3.5/site-packages/numpy/distutils/misc_util.py", line 1002, in add_subpackage
caller_level = 2)
File "/usr/local/lib/python3.5/site-packages/numpy/distutils/misc_util.py", line 971, in get_subpackage
caller_level = caller_level + 1)
File "/usr/local/lib/python3.5/site-packages/numpy/distutils/misc_util.py", line 908, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "scipy/linalg/setup.py", line 20, in configuration
raise NotFoundError('no lapack/blas resources found')
numpy.distutils.system_info.NotFoundError: no lapack/blas resources found