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bioinfo-lecture's Introduction


Overview

  • Data Engineer at Creative Survey Inc. (2022/7~)
  • Bioinfomatician
    • Single Cell & Bulk Transcriptome Analysis
    • Whole Genome Sequencing

Skills

Programming Language / Frameworks

R Python Terraform dbt
Ruby Ruby on Rails

Database

snowflake mysql

Cloud

AWS : Fargate ECS RDS

Monitoring

datadog NewRelic

Tool

Docker GithubActions Salesforce googleanalytics slack notion

Links

Twitter LinkedIn Zenn

bioinfo-lecture's People

Contributors

dogtk avatar knakamura6222053 avatar taka0007 avatar

Stargazers

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Watchers

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bioinfo-lecture's Issues

scRNA-seq本 第5章をやる

概要

scRNA-seq本 第5章をやる

Todo

  • Single Cell RNA-seqデータの探し方
  • クラスター毎に自動で細胞種ラベルを付与する
  • FeaturePlotで遺伝子発現を確認する
  • Single Cell RNA-seqデータセット同士を結合する
  • バッチエフェクトを補正して、コントロール群と刺激群を比較する
  • クラスターごとのマーカー遺伝子の特定

scRNA-seq本 第4章をやる

概要

scRNA-seq本 第4章をやる

Todo

  • Seuratによる解析準備
  • Seuratによるデータ前処理の手順
  • Seuratによるデータ解析の手順

scRNA-seq本 第4をやる

概要

scRNA-seq本 第4章をやる

Todo

  • Seuratによる解析準備
  • Seuratによるデータ前処理の手順
  • Seuratによるデータ解析の手順

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