douwehorsthuis/eeg_to_erp_pipeline_stats_r

General pipeline used for analyzing EEG data where Raw EEG data gets transformed into ERPS and Stats are done in R (Mixed effects models)

eeg_to_erp_pipeline_stats_r's Issues

bridge function in wrong location

need to move it down to when the data has channel locations

re-referencing order

if re-referencing to a specific channel, that should be done after ICA

EEG.event problem

figure out why EEG.event created edftypes with condition and without

Checking for bridged channels

the new cleaning function looks for correlations, but we need to check if it checks for min or max correlations.

Double check how often you re-reference

@anafrancisco mentioned that there are several moments where a avg reference and even a tp8 reference happend. This should not be the case

move plot bad channels to manual check script

should be there because that's where ultimatly the final amount of channels always exist

update to include group quality

add to the C-manual_check script:

quality(s,:)=[str2double(subject_list{s}), EEG.deleteddata_wboundries, length(EEG.del_chan)];

pop_clean_rawdata, not excluding externals from cleaning

The pop_clean_rawdata function is able to exclude externals.
See sccn/clean_rawdata#28

finding functions in script 2

add the function folder to path automatic