dozi93/ldttest-analysis

LDTTest-analysis

Repository containing the workflow implemented for analysing the data obtained from the Light/Dark Transition Test using the DanioVision Chamber by Noldus. It is a popular test method used in behavioural ecotoxicology to characterize effects of neurotoxic chemicals on Danio rerio.

Structure

The workflow is separated into four different scripts, each serving one different purpose within the analysis workflow.

1. Import-Script - For combining the raw data output with the metainformation, resulting in a dataframe combining both
2. Outlier-Script - For dropping fish from the analysis which were lost by the cameras during the tracking procedure
3. Filtering-Script - Preprocessing and combining all time series which the user wishs to compare
4. Analysis-Script - Calculating the hierarchical linkage between the preprocessed time series and visualize the results

Application

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Setup of Metafiles

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Setup of the Data

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