Demo Case : RuntimeError & ChildFailedError

[dptech-corp]

Demo Case : RuntimeError & ChildFailedError

[showlrr2]

  (unifold) unifold13@unfold-1:/data/unifold13/applications/uniFold/Uni-Fold$ conda list
# packages in environment at /home/unifold13/.conda/envs/unifold:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                        main
_openmp_mutex             5.1                       1_gnu
absl-py                   1.3.0                    pypi_0    pypi
biopython                 1.80                     pypi_0    pypi
ca-certificates           2022.10.11           h06a4308_0
certifi                   2022.12.7        py38h06a4308_0
contextlib2               21.6.0                   pypi_0    pypi
hmmer                     3.1b2                         0    biocore
kalign2                   2.04                 hec16e2b_3    bioconda
ld_impl_linux-64          2.38                 h1181459_1
libffi                    3.3                  he6710b0_2
libgcc-ng                 11.2.0               h1234567_1
libgomp                   11.2.0               h1234567_1
libstdcxx-ng              11.2.0               h1234567_1
lmdb                      1.4.0                    pypi_0    pypi
ml-collections            0.1.1                    pypi_0    pypi
ncurses                   6.3                  h5eee18b_3
numpy                     1.24.0                   pypi_0    pypi
openssl                   1.1.1s               h7f8727e_0
pandas                    1.5.2                    pypi_0    pypi
pip                       22.3.1           py38h06a4308_0
protobuf                  3.20.1                   pypi_0    pypi
python                    3.8.10               h12debd9_8
python-dateutil           2.8.2                    pypi_0    pypi
pytz                      2022.7                   pypi_0    pypi
pyyaml                    6.0                      pypi_0    pypi
readline                  8.2                  h5eee18b_0
scipy                     1.10.0rc1                pypi_0    pypi
setuptools                65.5.0           py38h06a4308_0
six                       1.16.0                   pypi_0    pypi
sqlite                    3.40.0               h5082296_0
tensorboardx              2.5.1                    pypi_0    pypi
tk                        8.6.12               h1ccaba5_0
tokenizers                0.13.2                   pypi_0    pypi
torch                     1.11.0                   pypi_0    pypi
tqdm                      4.64.1                   pypi_0    pypi
typing-extensions         4.4.0                    pypi_0    pypi
unicore                   0.0.1                    pypi_0    pypi
unifold                   2.2.1                     dev_0    <develop>
wheel                     0.37.1             pyhd3eb1b0_0
xz                        5.2.8                h5eee18b_0
zlib                      1.2.13               h5eee18b_0

[ZiyaoLi]

can you please tell me your GPU and check if it supports bfloat16? looks to me is that your device does not support bfloat16.

[ZiyaoLi]

I saw it in the log that you were using Tesla T4. It does not support bfloat16. so try to remove --bf16 and --bf16-sr in the script and check if you can run it.

[showlrr2]

I saw it in the log that you were using Tesla T4. It does not support bfloat16. so try to remove --bf16 and --bf16-sr in the script and check if you can run it.

thanks, i'll try ~