Comments (3)
ZiyaoLi
commented on September 26, 2024
Hi @babaid, we are now testing the stability of supporting customized PDB templates. Hopefully will release in 2 weeks. Additionally, if you would like to skip or accelerate the MSA searching part, I would recommend you use the Uni-Fold notebook, which uses the MMseqs API and does the search in <5min generally.
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babaid
commented on September 26, 2024
Thanks, that sounds really good, and I am also already using the notebook. Keep up the good work!
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FranceCosta
commented on September 26, 2024
Hi! Has this feature been added?
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Related Issues (20)
- colab error HOT 8
- Is total_step fixed? HOT 2
- import_jax_weights_ failed on AlphaFold-Multimer 2.3.0 HOT 3
- parameters are missing in the pretrained weights HOT 4
- Multi node training HOT 3
- Could not find path to the "hhblits" binary
- Run Uni-Fold with Bohrium Apps
- FileNotFoundError: No such file or directory: '/C.feature.pkl.gz' HOT 1
- questions on installing on Ubuntu Linux 22.04 HOT 1
- recreating homo_search.py output -- minimal version HOT 3
- competition multimer analysis -- does chain order matter? HOT 7
- model name for all alphafold parameters HOT 1
- multi-gpu inference
- convert_unifold_to_alphafold.py?
- UniFold crash: unable to find SCOPdata (a bug that has popped up in ColabFold, & there is a straightforward reason and patch) HOT 2
- Training with linkers
- Symmetry code doesn’t work HOT 4
- Unifold-Musse training and finetuning scripts as well as the ability to use PDB templates
- Unifold on custom a3m MSA files
- parameters setting
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