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Command-line tool (+ C library) for converting SAS, Stata, and SPSS files

License: MIT License

Makefile 0.71% Shell 0.01% M4 0.22% C 96.76% Ragel 2.31%

readstat's Introduction

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ReadStat: Read (and write) data sets from SAS, Stata, and SPSS

Originally developed for Wizard, ReadStat is a command-line tool and MIT-licensed C library for reading files from popular stats packages. Supported formats include:

  • SAS: SAS7BDAT and SAS7BCAT
  • Stata: DTA
  • SPSS: POR and SAV

There is also write support for all formats except SAS7BCAT. For reading in R data files, please see the related librdata project.

Installation

Bootstrap autotools by running ./autogen.sh and then proceed as usual:

./configure
make
sudo make install

If you're on Windows see Windows specific notes.

Command-line Usage

Standard usage:

readstat <input file> <output file>

Where:

  • <input file> ends with .dta, .por, .sav, or .sas7bdat, and
  • <output file> ends with .dta, .por, .sav, .sas7bdat, or .csv

If libxlsxwriter is found at compile-time, an XLSX file (ending in .xlsx) can be written instead.

Note that ReadStat will not overwrite existing files, so if you get a "File exists" error, delete the file you intend to replace.

If you have a SAS catalog file containing the data set's value labels, a second invocation style is supported:

readstat <input file> <catalog file> <output file>

Where:

  • <input file> ends with .sas7bdat
  • <catalog file> ends with .sas7bcat
  • <output file> ends with .dta, .por, .sav, or .csv

If the file conversion succeeds, ReadStat will report the number of rows and variables converted, e.g.

Converted 111 variables and 160851 rows in 12.36 seconds

At the moment value labels are supported, but the finer nuances of converting format strings (e.g. %8.2g) are not.

Command-line Usage with CSV input

A prerequisite for CSV input is that the libcsv library is found at compile time.

CSV input is supported together with a metadata file describing the data:

readstat <input file.csv> <input metadata.json> <output file>

The <output file> should end with .dta, .sav, or .csv.

The <input file.csv> is a regular CSV file.

The <input metadata.json> is a JSON file describing column types, value labels and missing values. The schema of this JSON file is fully described in variablemetadata_schema.json using JSON Schema.

The following is an example of a valid metadata file:

{
    "type": "SPSS",
    "variables": [
        {
            "type": "NUMERIC",
            "name": "citizenship",
            "label": "Citizenship of respondent",
            "categories": [
                {
                    "code": 1,
                    "label": "Afghanistan"
                },
                {
                    "code": 2,
                    "label": "Albania"
                },
                {
                    "code": 98,
                    "label": "No answer"
                },
                {
                    "code": 99,
                    "label": "Not applicable"
                }
            ],
            "missing": {
                "type": "DISCRETE",
                "values": [
                    98,
                    99
                ]
            }
        }
    ]
}

Here the column citizenship is a numeric column with four possible values 1, 2, 98, and 99. 1 has the label Afghanistan, 2 has Albania, 98 has No answer and 99 has Not applicable. 98 and 99 are defined as missing values.

Other column types are STRING and DATE. All values in DATE columns are expected to conform to ISO 8601 date. Here is an example of DATE metadata:

{
    "type": "SPSS",
    "variables": [
        {
            "type": "DATE",
            "name": "startdate",
            "label": "Start date",
            "categories": [
                {
                    "code": "6666-01-01",
                    "label": "no date available"
                }
            ],
            "missing": {
                "type": "DISCRETE",
                "values": [
                    "6666-01-01",
                    "9999-01-01"
                ]
            }
        }
    ]
}

Value labels are supported for DATE.

The last column type is STRING:

{
    "type": "SPSS",
    "variables": [
        {
            "type": "STRING",
            "name": "somestring",
            "label": "Label of column",
            "missing": {
                "type": "DISCRETE",
                "values": [
                    "NA",
                    "N/A"
                ]
            }
        }
    ]
}

Value labels are not supported for STRING.

Library Usage: Reading Files

The ReadStat API is callback-based. It uses very little memory, and is suitable for programs with progress bars. ReadStat uses iconv to automatically transcode text data into UTF-8, so you don't have to worry about character encodings.

See src/readstat.h for the complete API. In general you'll provide a filename and a set of optional callback functions for handling various information and data found in the file. It's up to the user to store this information in an appropriate data structure. If a context pointer is passed to the parse_* functions, it will be made available to the various callback functions.

Callback functions should return READSTAT_HANDLER_OK (zero) on success. Returning READSTAT_HANDLER_ABORT will abort the parsing process.

Example: Return the number of records in a DTA file.

#include "readstat.h"

int handle_info(int obs_count, int var_count, void *ctx) {
    int *my_count = (int *)ctx;

    *my_count = obs_count;

    return READSTAT_HANDLER_OK;
}

int main(int argc, char *argv[]) {
    if (argc != 2) {
        printf("Usage: %s <filename>\n", argv[0]);
        return 1;
    }
    int my_count = 0;
    readstat_error_t error = READSTAT_OK;
    readstat_parser_t *parser = readstat_parser_init();
    readstat_set_info_handler(parser, &handle_info);

    error = readstat_parse_dta(parser, argv[1], &my_count);

    readstat_parser_free(parser);

    if (error != READSTAT_OK) {
        printf("Error processing %s: %d\n", argv[1], error);
        return 1;
    }
    printf("Found %d records\n", my_count);
    return 0;
}

Example: Convert a DTA to a tab-separated file.

#include "readstat.h"

int handle_info(int obs_count, int var_count, void *ctx) {
    int *my_var_count = (int *)ctx;
    
    *my_var_count = var_count;

    return READSTAT_HANDLER_OK;
}

int handle_variable(int index, readstat_variable_t *variable, 
    const char *val_labels, void *ctx) {
    int *my_var_count = (int *)ctx;

    printf("%s", readstat_variable_get_name(variable));
    if (index == *my_var_count - 1) {
        printf("\n");
    } else {
        printf("\t");
    }

    return READSTAT_HANDLER_OK;
}

int handle_value(int obs_index, readstat_variable_t *variable, readstat_value_t value, void *ctx) {
    int *my_var_count = (int *)ctx;
    int var_index = readstat_variable_get_index(variable);
    readstat_type_t type = readstat_value_type(value);
    if (!readstat_value_is_system_missing(value)) {
        if (type == READSTAT_TYPE_STRING) {
            printf("%s", readstat_string_value(value));
        } else if (type == READSTAT_TYPE_INT8) {
            printf("%hhd", readstat_int8_value(value));
        } else if (type == READSTAT_TYPE_INT16) {
            printf("%hd", readstat_int16_value(value));
        } else if (type == READSTAT_TYPE_INT32) {
            printf("%d", readstat_int32_value(value));
        } else if (type == READSTAT_TYPE_FLOAT) {
            printf("%f", readstat_float_value(value));
        } else if (type == READSTAT_TYPE_DOUBLE) {
            printf("%lf", readstat_double_value(value));
        }
    }
    if (var_index == *my_var_count - 1) {
        printf("\n");
    } else {
        printf("\t");
    }

    return READSTAT_HANDLER_OK;
}

int main(int argc, char *argv[]) {
    if (argc != 2) {
        printf("Usage: %s <filename>\n", argv[0]);
        return 1;
    }
    int my_var_count = 0;
    readstat_error_t error = READSTAT_OK;
    readstat_parser_t *parser = readstat_parser_init();
    readstat_set_info_handler(parser, &handle_info);
    readstat_set_variable_handler(parser, &handle_variable);
    readstat_set_value_handler(parser, &handle_value);

    error = readstat_parse_dta(parser, argv[1], &my_var_count);

    readstat_parser_free(parser);

    if (error != READSTAT_OK) {
        printf("Error processing %s: %d\n", argv[1], error);
        return 1;
    }
    return 0;
}

Library Usage: Writing Files

ReadStat can write data sets to a number of file formats, and uses largely the same API for each of them. Files are written incrementally, with the header written first, followed by individual rows of data, and ending with some kind of trailer. (So the full data file never resides in memory.) Unlike like the callback-based API for reading files, the writer API consists of function that the developer must call in a particular order. The complete API can be found in src/readstat.h.

Basic usage:

#include "readstat.h"

/* A callback for writing bytes to your file descriptor of choice */
/* The ctx argument comes from the readstat_begin_writing_xxx function */
static ssize_t write_bytes(const void *data, size_t len, void *ctx) {
    int fd = *(int *)ctx;
    return write(fd, data, len);
}

int main(int argc, char *argv[]) {
    readstat_writer_t *writer = readstat_writer_init();
    readstat_set_data_writer(writer, &write_bytes);
    readstat_writer_set_file_label(writer, "My data set");

    int row_count = 1;

    readstat_variable_t *variable = readstat_add_variable(writer, "Var1", READSTAT_TYPE_DOUBLE, 0);
    readstat_variable_set_label(variable, "First variable");

    /* Call one of:
     *   readstat_begin_writing_dta
     *   readstat_begin_writing_por
     *   readstat_begin_writing_sas7bdat
     *   readstat_begin_writing_sav
     *   readstat_begin_writing_xport
     */

    int fd = open("something.dta", O_CREAT | O_WRONLY);
    readstat_begin_writing_dta(writer, &fd, row_count);

    int i;
    for (i=0; i<row_count; i++) {
        readstat_begin_row(writer);
        readstat_insert_double_value(writer, variable, 1.0 * i);
        readstat_end_row(writer);
    }

    readstat_end_writing(writer);
    readstat_writer_free(writer);
    close(fd);

    return 0;
}

Language Bindings

Windows specific notes

You need to install and configure an msys2 environment to compile ReadStat.

First, download and install msys2 from here. Make sure you update your initial msys2 installation as described on that page.

Second, install a number of additional packages at the msys2 command line:

pacman -S autoconf automake libtool mingw-w64-x86_64-toolchain ingw-w64-x86_64-cmake mingw-w64-x86_64-libiconv

Finally, start a MINGW command line (not the msys2 prompt!) and follow the general install instructions for this package.

readstat's People

Contributors

evanmiller avatar davidanthoff avatar jar1karp avatar lionel- avatar hadley avatar ivarref avatar karissa avatar

Watchers

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