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LotterhosLabContainers

container environments for lab research

general tools

fastqc multiqc bedtools bamtools vcftools plink plink2 samtools

ancient DNA tools

mapDamage bowtie2 BWA GATK ANGSD NGSadmix smartpca / eigensoft Pcangsd

R packages

library(devtools) library(data.table) library(bigstatsr) library(bigsnpr) library(hash) library(ggplot2) library(tidyverse) library(vegan) library(pheatmap) library(viridisLite) library(heatmap3) library(LEA) library(pcadapt) library(hierfstat) library(adegenet) library(ade4) library(pegas) library(poppr) library(psych) library(vcfR) library(OutFLANK) library(gradientForest) library(raster) library(rgdal) library(rnaturalearth) library(rnaturalearthdata) library(sdmpredictors) library(sf) library(rgeos) library(stringr) library(terra) library(qvalue)

Madeline used these R packages for processing environmental data and making maps/phenotype-geography maps in R - might want to add?

library(dplyr) library(lubridate) library(readr) library(tidyverse) library(ggrepel) library(maps) library(lme4) library(sp) library(rasterVis) library(scales) library(colourvalues)

lotterhoslabcontainers's People

Contributors

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