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keras-retinanet

Keras implementation of RetinaNet object detection.

kerastrainutils

lab-keras-r

lasagne

Lightweight library to build and train neural networks in Theano

learning-from-taxonomies

mammoviews

scripts for automatic classification of mammography views

manuallabeller

an app for manual labelling

mapbyseqhmm

a hidden Markov chain model based method for denoising mapping-by-sequencing data

mapbyseqhmmpy

Mapping Mutations by High Throughput Sequencing of Bulked Segregants

ou_diffusion

pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

particle_filter_chainer

pdscatter

pipe_immunobase_gwas

showcase of using Makefile for a bioinformatic pipeline; splits GWAS file into per-gene files

plot_contigs

poisson_footprints

proc

Display and analyze ROC curves in R and S+

pyfm

Factorization machines in python

python-novice-gapminder

Introduction to Python for non-programmers using gapminder data

pytorch-retinanet

Pytorch implementation of RetinaNet object detection.

quickumls

System for Medical Concept Extraction and Linking

rle

rnn_sandbox

rpyglmnet

an rpy2 wrapper around R glmnet package

scikit-learn

scikit-learn: machine learning in Python

scispacy

A full spaCy pipeline and models for scientific/biomedical documents.

shell-novice

Software Carpentry introduction to the shell for novices.

slideslicer

a toolbox for manipulation of digital pathology slides and annotations

snpdb

a tool to port SNPs from vcf to SQLite database

spacy

💫 Industrial-strength Natural Language Processing (NLP) with Python and Cython