Name: Dan Spakowicz
Type: User
Company: The Ohio State University Medical Center
Bio: Assistant Professor computational biology / genomics / microbial ecology writing in R. Side projects supporting data-driven policy decisions and ultra running.
Location: Columbus, OH
Blog: https://u.osu.edu/spakowiczlab/
Dan Spakowicz's Projects
Convert statistical analysis objects from R into tidy format
Biomedical Informatics
Tool that generates “quality control statistics” from FastQ file
a tool that trims reads based on quality score from FastQ file.
A tool that calculates co-expressed gene network from GCT file of gene expressions.
Artistic town street map made with Open Street Map data and ggplot2
Code to reproduce the analyses described in the manuscript, "Approaches for integrating heterogeneous RNA-seq data reveals cross-talk between microbes and genes in asthmatic patients"
Phylogenetic tree to support the publication of Nneoma's endophyte
A collection of useful .gitignore templates
scripts for converting google contacts data to holiday card formats
Analysis of jag1 and its effect on lung cancer outcomes
Convert workout data from Peloton into JSON/TCX/FIT files that can be uploaded to Garmin Connect
2021-mic duke workshop
Package in R for working with GEDCOM genealogy files.
Data and analysis scripts for Matson et al. 2017 manuscript
An example that will cause a build failure
This is the record of preparation and reporting for @dspak and @ajtrexler's ultra running.
Code related to the SeeClickFix / Crime analysis