dualword/cutevcf

simple viewer for variant call format using htslib

CuteVCF

simple GUI viewer for vcf file (variant call format) using htslib.

Prerequis

Install Qt >5.7

From Qt website : Download Qt > 5.7 from https://www.qt.io/.
Don't forget to check QtChart module during installation.

From ubuntu : Qt 5.7 is not yet avaible with ubuntu. But you can add PPA to your software system. For exemple for xenial

sudo add-apt-repository ppa:beineri/opt-qt57-xenial
sudo apt-get install qt57base qt57charts-no-lgpl
source /opt/qt57/bin/qt57-env.shf

From fedora : Qt 5.7 is avaible

sudo dnf install qt5-qtbase-devel qt5-qtcharts-devel 

Compile CuteVCF

From Qt Creator: Open the CuteVcf.pro from Qt creator Compile it and Run it

From Terminal: Be sure you have the correct version of Qt (>5.7) by using qmake. You will find qmake in bin folder where you installed Qt. For exemple, if you installed Qt from ppa:beineri, you will find it under /opt/qt57/bin/qmake. Then launch the compilation from CuteVCF folder as follow.

 git clone --recursive [email protected]:labsquare/CuteVCF.git
 qmake --version
 qmake 
 make