is a project by the diedrichsen lab to build and html-based viewer for functional and other atlas data for the human cerebellum in SUIT or MNI space, including interactive visualization on the SUIT flatmap. The code is based on the repository rii-mango/Papaya
For information on SUIT and an online version of the viewer, please visit diedrichsenlab.org/imaging/suit.htm
Papaya is a pure JavaScript medical research image viewer, supporting DICOM and NIFTI formats, compatible across a range of web browsers. This orthogonal viewer supports overlays, atlases, GIFTI & VTK surface data and DTI data. The Papaya UI is configurable with many display, menu and control options and can be run on a web server or as a local, shareable file.
- Requirements: Firefox (7+), Chrome (7+), Safari (6+), iOS (6+), IE (10+), Edge (12+)
- Supported Formats: NIFTI (.nii, .nii.gz), DICOM (compressed/uncompressed), GIFTI (.surf.gii), VTK
Load tests/debug_local.html or tests/debug_server.html in your favorite JavaScript debugger.
See here for the latest release or run papaya-builder.sh to create your own build. See the documentation for more information.
<!DOCTYPE html>
<html xmlns="http://www.w3.org/1999/xhtml" lang="en">
<head>
<link rel="stylesheet" type="text/css" href="papaya.css" />
<script type="text/javascript" src="papaya.js"></script>
<title>Papaya Viewer</title>
</head>
<body>
<div class="papaya"></div>
</body>
</html><head>
...
<script type="text/javascript">
var params = [];
params["worldSpace"] = true;
params["images"] = ["data/myBaseImage.nii.gz", "data/myOverlayImage.nii.gz"];
params["surfaces"] = ["data/mySurface.surf.gii"];
params["myOverlayImage.nii.gz"] = {"min": 4, "max": 10};
</script>
</head>
...
<div class="papaya" data-params="params"></div>Papaya uses:
- Daikon for DICOM support
- NIFTI-Reader-JS for NIFTI support
- GIFTI-Reader-JS for GIFTI support
As well as the following third-party libraries:
- bowser — for browser detection
- Closure Compiler — JavaScript compression
- jquery — DOM manipulation
- numerics — for matrix math
- pako — for GZIP inflating
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