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learn_cryoem_math

localcolabfold

ColabFold on your local PC

measles

Visualizing the 2019 Measles Outbreak (with Python)

minimal

Personal blog theme powered by Hugo

momacolors

Color Schemes based around artwork and the Museum of Modern Art.

mrc_map_to_cube

Convert tomography map from cuboid to cube which can be open in Relion

mrc_napari_viewer

Cryo-EM data viewer in napari

mrcvolume_viewer

Preview mrc volume in a simple viewer!

mtd-2d-em

Code for the paper An approximate expectation-maximization for two-dimensional multi-target detection by Shay Kreymer, Amit Singer and Tamir Bendory.

n2v

This is the implementation of Noise2Void training.

namdinator_bash

Bash version of Namdinator

newsroom

A simple, minimalistic Hugo theme. View Demo here

nikon_nd2_viewer

Small script to open nikon nd2 microscope files

optimize-images

A command-line interface (CLI) utility written in pure Python to help you reduce the file size of images.

orffinder

ORFFinder in Python

pilus_stability

Code related to pilus stability manuscript

plenopticam

Light-field imaging application for plenoptic cameras

plot-chormatogram

protein-reconstruction

Learning to recover orientations from projections in single-particle cryo-EM

protein-simulator

Protein sequence simulation using RNN

proteom_histogram

Simple script to show histograms based on proteom. Works well with uniprot fasta files

pyem

Python programs for electron microscopy

relion

Image-processing software for cryo-electron microscopy

relion-1

Scripts for using the Relion package for single particle cryo-electron microscopy (cryo-EM)

relion_follow_classification

Follow your classification and refinement in Relion the real time!

relion_star_parser

A simple .star file parser which allows Relion star file plotting, modification and conversion

relion_to_cistem

Converts autopick cooridinates from Relion to cisTEM

relion_to_cryosparc2

Export coordinates from Relion to Cryosparc2

rmsd

Calculate Root-mean-square deviation (RMSD) of two molecules, using rotation, in xyz or pdb format

samila

Generative Art Generator