ebi-gene-expression-group Goto Github PK
Name: EBI Gene Expression Group
Type: Organization
Name: EBI Gene Expression Group
Type: Organization
Collection of workflows for generation of pre-trained classifiers on SCXA datasets
CellAssign is a marker-based cell type identification method.
Nextflow pipeline for cellassign-cli package.
Python pipeline and Javascript scatter plot library for single-cell datasets
Python approach to command line interface and galaxy wrappers automated generation
Common functions with general utility to Atlas activities
A data model describing the experimental metadata attributes that are used for converting other data formats to MAGE-TAB
Galaxy container for single cell RNA-Seq tertiary analysis tools
Development project for comparing cell groupings between experiments across species
Java component for running galaxy-cli-executor
Relevant curated metadata to be consumed by Atlas Prod pipelines and Atlas Web Applications
Data export module for Atlas Prod
Atlas prod module for data release operations
An AtlasProd module for loading scxa-analytics data to postgres.
DropletUtils scripts to install as a Bioconda package for making workflows
GitHub Pages repository
Get up and running with EBI-themed Jekyll fast (rolled with gh-pages in mind, clone/fork suggested)
An npm module containing ESLint settings for the Gene Expression group.
experiment_metadata code, factored out from atlas-prod
React component that offers gene ID suggestions returned by Single Cell Expression Atlas, optionally filtered by species
Curation rules and experiment inclusion criteria for the Expression Atlas
Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.
Data intensive science for everyone.
Standard tool installation for GXA Galaxy instances
Minimal setup required to run Galaxy under Kubernetes
Utility scripts to run a Galaxy workflow on Galaxy through the CLI
:microscope::books: Galaxy Tool wrappers
Command line interface for the Garnett cell type classification tool
Nextflow pipeline for garnett-cli tool
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.