ecell/ecell4-mac

A repository for Mac OS X E-Cell4 wheels [Archived, We moved from wheel to conda package.]

ecell4-mac's Issues

delocate fails in Sierra

bash-3.2$ ~/Library/Python/2.7/bin/delocate-listdeps --all python/dist/ecell-4.0.4-cp27-cp27m-macosx_10_12_intel.whl 
Traceback (most recent call last):
  File "/Users/knishida/Library/Python/2.7/bin/delocate-listdeps", line 61, in <module>
    main()
  File "/Users/knishida/Library/Python/2.7/bin/delocate-listdeps", line 44, in main
    lib_dict = wheel_libs(path)
  File "/Users/knishida/Library/Python/2.7/lib/python/site-packages/delocate/libsana.py", line 161, in wheel_libs
    lib_dict = tree_libs(tmpdir, filt_func)
  File "/Users/knishida/Library/Python/2.7/lib/python/site-packages/delocate/libsana.py", line 54, in tree_libs
    for install_name in get_install_names(depending_libpath):
  File "/Users/knishida/Library/Python/2.7/lib/python/site-packages/delocate/tools.py", line 166, in get_install_names
    out = back_tick(['otool', '-L', filename])
  File "/Users/knishida/Library/Python/2.7/lib/python/site-packages/delocate/tools.py", line 58, in back_tick
    cmd_str, retcode, err.decode('latin-1')))
RuntimeError: otool -L /private/var/folders/l9/0ngq1rx57kq46wcysykycblr0000gn/T/tmpU7Go9f/ecell-4.0.4.data/data/ecell4-licenses/hdf5.txt returned code 1 with error /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/objdump: '/private/var/folders/l9/0ngq1rx57kq46wcysykycblr0000gn/T/tmpU7Go9f/ecell-4.0.4.data/data/ecell4-licenses/hdf5.txt': The file was not recognized as a valid object file.
fatal error: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/otool: internal objdump command failed

ImportError: dlopen

This error occured with v4.2.0 wheel file.
https://github.com/ecell/ecell4-wheels/releases/tag/v4.2.0

knishidas-MacBook-Pro:bin knishida$ ./python
Python 3.7.1 (default, Oct 23 2018, 14:07:42) 
[Clang 4.0.1 (tags/RELEASE_401/final)] :: Anaconda, Inc. on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> from ecell4 import core
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/Users/knishida/miniconda3/lib/python3.7/site-packages/ecell4/__init__.py", line 1, in <module>
    from ecell4.core import *
ImportError: dlopen(/Users/knishida/miniconda3/lib/python3.7/site-packages/ecell4/core.cpython-37m-darwin.so, 2): Symbol not found: __ZN5boost11basic_regexIcNS_12regex_traitsIcNS_16cpp_regex_traitsIcEEEEE9do_assignEPKcS7_j
  Referenced from: /Users/knishida/miniconda3/lib/python3.7/site-packages/ecell4/core.cpython-37m-darwin.so
  Expected in: flat namespace
 in /Users/knishida/miniconda3/lib/python3.7/site-packages/ecell4/core.cpython-37m-darwin.so
>>>