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segfault on install about rcppannoy HOT 2 CLOSED

eddelbuettel avatar eddelbuettel commented on May 31, 2024
segfault on install

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Comments (2)

eddelbuettel avatar eddelbuettel commented on May 31, 2024

Odd. I happen to work on Ubuntu too, so I would have seen that, as would CRAN.

I would recommend maybe reinstalling Rcpp from source, working that way is my default. Maybe you have older one via the r-cran-rcpp package.

And for what it is worth, it installs fine here too (on 16.04):

$ install.r RcppAnnoy
trying URL 'https://cran.rstudio.com/src/contrib/RcppAnnoy_0.0.7.tar.gz'
Content type 'application/x-gzip' length 27566 bytes (26 KB)
==================================================
downloaded 26 KB

* installing *source* package ‘RcppAnnoy’ ...
** package ‘RcppAnnoy’ successfully unpacked and MD5 sums checked
** libs
ccache g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I../inst/include/  -I"/usr/local/lib/R/site-library/Rcpp/include"   -fpic  -g -O3 -Wall -pipe -Wno-unused  -c annoy.cpp -o annoy.o
ccache g++ -std=c++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o RcppAnnoy.so annoy.o -L/usr/lib/R/lib -lR
installing to /usr/local/lib/R/site-library/RcppAnnoy/libs
** R
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (RcppAnnoy)

The downloaded source packages are in
        ‘/tmp/downloaded_packages’
$ R

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.


Basically R is reluctant to let you shoot yourself in the foot unless you are really determined to do so.
   -- Bill Venables (about the warning hist() issues when being called with unequal interval widths and freq=TRUE)
      R-help (May 2008)

R> library(RcppAnnoy)
R> 

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gdkrmr avatar gdkrmr commented on May 31, 2024

it worked now, I tried from a different directory, maybe it had something todo with that namespace hack I did with roxygen (r-lib/roxygen2#495).

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