Related Issues (20)
- Use EM to estimate replay speed
- Use trapz instead of sum for the integrals
- Rename trajectory direction?
- State probability is not converging fast enough?
- Change order of dimensions for data in predict_state HOT 1
- Scale maximum likelihood so that peak is always 1
- Change how training data is entered into the decoder because of the state transition matrix needs the lagged position
- Implement saving/loading model using joblib HOT 1
- Make API more like scikit-learn
- Implement the observation model plots in the same manner as `replay_identification`
- State transition model is not working
- Implement filter and smoother using `log_sum_exp` trick to prevent under and overflow
- Fix tests
- Better documentation of class function usage
- Add inbound-reverse/outbound-reverse to examples of simulated data in notebook
- Differences from xinyi's code HOT 1
- Add interactive visualizations via holoviews?
- Make installable from conda
- Better model for reverse time trajectory for the ripple decoding
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from replay_classification.