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View Code? Open in Web Editor NEWEDRN's knowledge using the Resource Description Format (RDF)
EDRN's knowledge using the Resource Description Format (RDF)
The RDF being generated in https://github.com/EDRN/edrn.rdf/blob/master/edrn/rdf/edrnlabcasrdfgenerator.py creates thousands and thousands of duplicate entires (for "Automated Quantitative Measures of Breast Density Data"). It should make about 80 entires for EDRN LabCAS but is making over 4000.
LabCAS 2.0 has different semantics for data collections and it's about time we address what @chrismattmann started a dozen years ago.
First off, all collection are the same, so we should get rid of this semantic:
<edrn:DNA_METHYLATION_LEV1 rdf:about="…">
<edrn:DataSetName>DNA_METHYLATION_LEV1</edrn:DataSetName>
</edrn:DNA_METHYLATION_LEV1>
<edrn:FHCRC_MALDI_Dilution_Processed_Data rdf:about="…">
<edrn:DataSetName>FHCRC MALDI Dilution Processed Data</edrn:DataSetName>
</edrn:FHCRC_MALDI_Dilution_Processed_Data>
…
because this says we have two different objects of two different types when in reality they're just two collections with different names. This should be:
<edrn:Collection rdf:about="…">
<edrn:DataSetName>DNA_METHYLATION_LEV1</edrn:DataSetName>
</edrn:Collection>
<edrn:Collection rdf:about="…">
<edrn:DataSetName>FHCRC MALDI Dilution Processed Data</edrn:DataSetName>
</edrn:Collection>
…
Then we need to address what Focus BMDB does and fix trying to interpret an XML tag name 😬 and adjust the portal too
While we're at it: use a Dublin Core title
instead of our app-specific DataSetName
!
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