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1000g-integration

variant integration methods for the 1000 Genomes Project

3q29

3q29 pangenome build from HPRC year 1 samples

5-virus-mix

Benchmarking data sets for haplotype reconstruction methods, sequenced with Illumina MiSeq, 454/Roche GSJunior, and Pacific Biosciences

abpoa

abPOA: an SIMD-based C library for fast partial order alignment using adaptive band

acad18

Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop

algobeatstream

a world-spanning virtual algojam studio and streaming service

alignment-and-variant-calling-tutorial

basic walk-throughs for alignment and variant calling from NGS sequencing data

allelic

an allele-centric compression model for genomic data

aptertree

Apter Trees in rust

arfer

annotation of variants using genotype likelihoods

atomicbitvector

atomic bitset/bitvector with size determined at runtime

bad-python-list

equal lists should serialize equally, but don't

bam-mergeref

bamaddrg

adds sample names and read-group (RG) tags to BAM alignments

bamprofile

profiles alignment mismatches and gaps

bamqualbinner

bins quality scores in BAM data for better compression (and testing of lossy compression)

bamquality

read quality distributions for BAM and FASTQ files

bamtools

C++ API & command-line toolkit for working with BAM data

beats

snippets of music in foxdot

bh23-sesebub

biosketch

always useful for NIH grants

bitcoin-fs

encode arbitrary data in bitcoin transactions

bkmers

binary kmers written numerically

bmap

binary search based map using a plain vector of pairs for storage

bsort

Extremely fast inplace radix sort

casrt

causal-conv1d

Causal depthwise conv1d in CUDA, with a PyTorch interface

colorbrewer

single-header colorbrewer palettes in C++

complete-striped-smith-waterman-library

contend

a command-line utility to generate contingency tables between categorical variables