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multipermute

efficient multiset permutations

mummer

Mummer alignment tool

mutatrix

genome simulation across a population with zeta-distributed allele frequency, snps, insertions, deletions, and multi-nucleotide polymorphisms

neighborly-tour

nearest neighbor TSP

nikete-thesis

node

evented I/O for v8 javascript

nuller

null genotype caller which generates depth of coverage VCF

ogap

gap opening realigner for BAM data streams

openconnect-sso-docker

connect to a cisco anyconnect server with 2FA via web SSO on a headless server

order-by

order objects in an array by the order their keys occur in another array

paf2sxs

convert between PAF and SXS alignment formats

pafnet

PAF alignment to network format converter

pafplot

base-level dotplots from PAF alignments

parallel-radix-sort

An implementation of optimized parallel radix sort

parallelizer

scripts to simplify trivial parallelization of data processing software

paryfor

parallel_for based on atomic queues and C++11 threads

pb2json

Decode protobuf to json format

phage

phage assembly and analysis scripts

phred

convert phred quality scores to and from other numerical representations

phred.py

phred quality conversion to and from float and log space

pliib

A hacky little C++ library that holds some useful functions.

poa-motifs

exploring variation graph models for motifs based on partial order alignment

presentations

scientific communication

progressbar

An easy-to-use C library for displaying text progress bars.

protobuf

Protocol Buffers - Google's data interchange format

protobufstream

protocol buffers streams

r2dm

R2 transposon in Drosophila melanogaster

raduls

Ultra fast MSD radix sorter

rocksdb

A library that provides an embeddable, persistent key-value store for fast storage.

rzmblr

Read aZeMBLeR, pairwise-alignment based overlap graph generation from local alignments