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Xiangjie Li's Projects

awesome-single-cell icon awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

beer icon beer

BEER: Batch EffEct Remover for single-cell data

cidr icon cidr

Clustering through Imputation and Dimensionality Reduction

clustermap icon clustermap

ClusterMap for multi-scale clustering analysis of spatial gene expression

csvtk icon csvtk

A cross-platform, efficient and practical CSV/TSV toolkit in Golang

dca icon dca

Deep count autoencoder for denoising scRNA-seq data

deepcpg icon deepcpg

Deep neural networks for predicting CpG methylation

delorean icon delorean

R package to model time series accounting for noise in the temporal dimension. Specifically designed for single cell transcriptome experiments.

desc icon desc

Deep Embedding for Single-cell Clustering

desc-nopage icon desc-nopage

Deep Embedding for Single-cell Clustering. This repo has no files related to github page so that users can download it quickly.

dynbenchmark icon dynbenchmark

Comparison of methods for trajectory inference on single-cell data 🥇

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