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prime

Projective Resampling Imputation Estimation Method for Missing Covariates Problems

pyscenic

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.

rctd

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

scdml

Batch alignment of single-cell transcriptomics data using deep metric learning

scdml_reproduce

Batch alignment of single-cell transcriptomics data using deep metric learning

scpsm

Propensity Score Matching enables batch effect corrected imputation in single-cell RNA-seq analysis

scrna-seq-tcc-prep

Preprocessing of single-cell RNA-Seq data for input to kallisto

scrna.seq.datasets

Collection of public scRNA-Seq datasets used by our group

scrnaseq_benchmark

Bench-marking classification tools for scRNA-seq data

scvi

Deep generative modeling for single-cell transcriptomics

shiny-examples

single-cell-pseudotime

An overview of algorithms for estimating pseudotime in single-cell RNA-seq data

spagcn

SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network

spdr

Structure preserved dimension reduction using triplets for integration of single cell transcriptomics data

stagate_tutorials

t-sne-tutorial

A tutorial on the t-SNE learning algorithm

test

My Blog / Jekyll Themes / PWA

test2.github.io

testio

tradeseq

TRAjectory-based Differential Expression analysis for SEQuencing data

transferlearning-tutorial

《迁移学习简明手册》LaTex源码

tyleransom.github.io

viridis

Implementation of the Matplolib 'viridis' color map in R

vitessce-python

Python API and Jupyter widget for Vitessce

xiangjie

xiaoxiang.github.io

zenglix.github.io

create personal website at: https://zenglix.github.io/

zhang_lab

test homepage for Prof.Zhang