elife-asu / datadex Goto Github PK
View Code? Open in Web Editor NEWA system for organizing scientific datasets.
License: MIT License
A system for organizing scientific datasets.
License: MIT License
This would allow descriptions of the parameters within params to be documented by the user.
When iteratively generating data, it would be useful to be able to determine if a column header exists in the library.
At present, the only solution is something like
if 'header_name' in dex.headers():
pass
else:
pass
Create a method that queries the database for column header names, e.g.
def header_exists(header_name):
pass
The current params format is atrocious. All we can really do, in an automated way, is append to the end of it. I would be nice to be able to easily modify params files programmatically. For that to be the case, we need to use a standardized file format.
Use the JSON file format for params files.
We'd like to come up with a way to check if a file exists within a given folder. We talked about a couple ways of doing this, including:
What happens with duplicate params names and indexing? need test for this
If no column names are provided, the create_library
method will attempt to use a params file in the current directory to determine them. This could easily result in missing column headers when subdirectories have params that the root directory does not.
It would be worthwhile to be able to traverse the directory tree and extract all column headers.
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