weifang-sarscov2's People
weifang-sarscov2's Issues
Hi, do you have the sample dates ?
Hi, to add all but 7 of your sequences on nextstrain they'd like some sample dates (because on Gisaid only january and february is indicated and this is too large for the timeline tree of nextstrain)
And we are not sure if https://github.com/emvolz/weifang-sarscov2/blob/master/beast/seir.xml is the dates you obtained with your model or the true ones. Maybe you can indicate the dates on Gisaid ?
Thank you.
need help
when i run, there is an error, could you tell me how to do, thanks.
tds = sarscov2::make_starting_trees(fastafn = "data/2.fas", treeoutfn = "data/2.nwk",
-
plotout = "mltree_weifang.pdf", ntres = 8, ncpu = 1)
sh: iqtree: command not found
Error in .mltr(fastafn) : iqtree problem. Is it installed?
In addition: Warning message:
In system(paste0("iqtree -nt AUTO -redo -m HKY -s ", fn), intern = FALSE) :
error in running command
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