esskay0000/qtim_tutorials

Jupyter notebooks and other tutorials for medical imaging and deep learning, courtesy of the QTIM lab.

QTIM Tutorials

Jupyter notebooks and other tutorials for medical imaging and deep learning, courtesy of the QTIM lab.

Prerequisites

• Git - to download this repository
• Python 3 distribution. We recommend Anaconda: https://www.anaconda.com/download/
• Spyder 3 (Python IDE) - this comes with Anaconda, useful for larger projects
• Jupyter - also comes with Anaconda

Dependencies

• scikit-image - pip install scikit-image
• scikit-learn - pip install scikit-learn
• TensorFlow 1.5+ - pip install tensorflow
• Keras 2+ - pip install keras

If you have an NVIDIA GPU and would like to use it, then you'll need to also install:

• Up-to-date NVIDIA drivers
• NVIDIA CUDA toolkit
• CuDNN
• tensorflow-gpu