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agave_workshop_20180419

UH Agave Workshop 2018-04-19

apt_install

Installing packages from APT

awesome_bigdata_ai_drugdiscovery

A collection of resources useful for leveraging big data and AI for drug discovery. It mainly serves as an orientation for new lab folks. It may be biased towards my lab interest.

bct

biocimagebuilder

biojupies

Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.

biojupies-plugins

User-submitted RNA-seq data analysis tools for BioJupies.

car

:exclamation: This is a read-only mirror of the CRAN R package repository. car — Companion to Applied Regression. Homepage: https://r-forge.r-project.org/projects/car/, https://CRAN.R-project.org/package=car, http://socserv.socsci.mcmaster.ca/jfox/Books/Companion/index.html

caret

caret (Classification And Regression Training) R package that contains misc functions for training and plotting classification and regression models

cellxgene_vip

Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.

chl26predictor

An R package for applying the classical Hodgkin lymphoma (cHL) 26 gene predictor

cmapm

Connectivity Map analysis in MATLAB

cmapr

R

covid-19

cv

My curriculum vitae and other summaries of my scientific activities

cv-1

Curriculum Vitae

dashboards

[RETIRED] See Voilà as a supported replacement

datasci-docker

My personal data science setup in docker.

decontam

Simple statistical identification and removal of contaminants in marker-gene and metagenomics data

deep-learning-v2-pytorch

Projects and exercises for the latest Deep Learning ND program https://www.udacity.com/course/deep-learning-nanodegree--nd101

deep_learning_metabolomics

deepimpute

deprecated-boot-camps

DEPRECATED: please see individual lesson repositories for current material.

dgc_predict

Applies and evaluates a variety of methods to complete a partially-observed data tensor, e.g. comprising gene expression profiles corresponding to various drugs, applied in various cellular contexts.

diabetes_manuscript_code

dnea

Distribution repository for the Differential Network Enrichment Analysis project

docker-galaxy-stable

:whale::bar_chart::books: Docker Images tracking the stable Galaxy releases.

docker-stacks

Opinionated stacks of ready-to-run Jupyter applications in Docker.

doubletdetection

Doublet detection in single-cell RNA-seq data.

experience_summary