fairsim/fairsim-documentation

fairSIM user manual and algorithm description

fairSIM Documentation

This repository holds documentation related to fairSIM, e.g. the quickstart guide and some documentation of the algorithm (the source code itself is documented via javadoc).

Find a PDF version of the current quickstart guide here.

fairsim-documentation's Issues

Pixel size and simulated OTF for fairSIM

Hello! When trying to model superresolution capabilities of a microscope with fairSIM I have come across two issues and would be grateful if you could clarify those:

1. The ImageJ plugin only allows pixel sizes up to 500 nm - is it possible to use larger ones?

2. My OTF simulated with MATLAB is a matrix - can it be converted into a format required by fairSIM?

Thank you, Gleb

Convert to web page

This really could be moved from LaTeX to github pages... This would make it more flexible to be edited by other people.

missing information on how to convert OMX OTF files to fairSIMxml

The documentation states on a footnote:

OMX OTF files can be converted to our format with a small, additional plugin.

However, there is no more information where to find that plugin. I have searched on the source for fairSIM and couldn't find anything there. On fairsim.github.io there is a download link for the standard omx v4 otfs already converted but not a tool to convert from other existing ones.