A Snakemake workflow for benchmarking callsets of small genomic variants, using popular benchmark datasets like Genome in a Bottle or CHM-eval.
- Download raw data:
dataset link NA12878 Agilent (75M and 200M reads): NA12878 Twist (restricted access but you can ask for it via the zenodo interface): CHM: - Run your pipeline on it.
- Upload results (VCF or BCF) to zenodo.
- Create a pull request that adds your results to the config file, under variant-calls (see other entries for format).
The latest results for all contributed callsets are shown at https://ncbench.github.io.