fbergmann/edit-spatial

Basic Editor for Models using the SBML Spatial Package

Edit Spatial

This project contains a prototype editor for manipulating models using SBML Models using SBML Level 3 with the Spatial package.

Using the Editor

There is not much there just yet, basically just open the SBML model in it and inspect / modify the geometry. Currently supported geometries are images and analytic geometries. To make it easier to compose analytic geometries. The following predefined functions can be used:

• CIRCLE: use like: CIRCLE(x,y,25,25,10)
• ELLIPSE: use like: ELLIPSE(x,y,25,25,10,10)
• RECTANGLE: use like: RECT(x,y,10,10,10,10)
• FISH: use like: FISH(x,y,width,height)

How to build

The project is a .NET project simply open and compile EditSpatial.sln with either Visual Studio or MonoDevelop.

Libraries

This project requires the following libraries:

• libSBML along with a supported xml library (xml2, expat, xerces-c)
• Ookii.Dialogs used for browsing folders, easily

License

This project is licensed under the BSD license:

Copyright (c) 2015-2018, Frank T. Bergmann  
All rights reserved. 

Redistribution and use in source and binary forms, with or without 
modification, are permitted provided that the following conditions are 
met: 

Redistributions of source code must retain the above copyright notice, 
this list of conditions and the following disclaimer. Redistributions in 
binary form must reproduce the above copyright notice, this list of 
conditions and the following disclaimer in the documentation and/or 
other materials provided with the distribution. THIS SOFTWARE IS 
PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY 
EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 
IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR 
PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR 
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