The imaging from fhooeaist

Adapt the module packages

Is your feature request related to a problem? Please describe.
We should think of refactoring the packages in the additional modules and remove the additional "service" subpackage.

Describe the solution you'd like
Change packages like science.aist.imaging.service.mesh; to science.aist.imaging.mesh;.
Same for the other modules as core, imagej, mesh, microsoftcognitiveservices, nd4j, opencv, openimaj, pdfbox, tesseract, ...

Priority
Priority of this request Minor

Release first version

OpenIMAJ Module

Add connector modules for OpenIMAJ

Migrated from: https://aist.fh-hagenberg.at/git/Development/imaging/-/issues/292

Fix Javadoc Generation

The project is built using java11+, which means that everything that is not within a module gets assign to the default module. This causes the javadoc-search to work incorrectly.

...
<configuration>
    ...
    <additionalJOptions>
        <additionalJOption>--no-module-directories</additionalJOption>
    </additionalJOptions>
   ...
</configuration>
...

Add possiblity to chain multiple ImageFunctions

Allow chaining multiple image functions:
e.g.

ImageFunction<..> x = ...;
ImageFunction<..> y = ...;
var z = x.andThen(y);

Make sure that the interim result that is produced from x and used as an input of y, needs to be closed.

ImageJ Module

Add a new module that is a connector between Imaging and ImageJ.

Migrated from: https://aist.fh-hagenberg.at/git/Development/imaging/-/issues/291

Type-based ImageFactory

Create a Type-basedImageFactoryFactory, that returns a ImageFactory for a given type. This should be achieved, by adding a getSupportedType Method to the Factories, and use the Java https://docs.oracle.com/en/java/javase/11/docs/api/java.base/java/util/ServiceLoader.html to load different Factories, and use the one that supports the requested type.

[BUG] Non-required dependencies

Describe the bug
There are multiple non-required maven dependencies left over from the open sourcing process.

To Reproduce
E.g. Look into API pom.xml

Expected behavior
Removed dependencies.

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Detected dependencies

maven

api/pom.xml

science.aist.imaging:imaging 2.0.1-SNAPSHOT

core/pom.xml

science.aist.imaging:imaging 2.0.1-SNAPSHOT

science.aist.imaging:api ${project.parent.version}

imagej/pom.xml

science.aist.imaging:imaging 2.0.1-SNAPSHOT

science.aist.imaging:api ${project.parent.version}

javacv/pom.xml

science.aist.imaging:imaging 2.0.1-SNAPSHOT

science.aist.imaging:api 2.0.1-SNAPSHOT

mesh/pom.xml

science.aist.imaging:imaging 2.0.1-SNAPSHOT

science.aist.imaging:api ${project.parent.version}

microsoftcognitiveservices/pom.xml

science.aist.imaging:imaging 2.0.1-SNAPSHOT

science.aist.imaging:api ${project.parent.version}

science.aist.imaging:core ${project.parent.version}

nd4j/pom.xml

science.aist.imaging:imaging 2.0.1-SNAPSHOT

science.aist.imaging:api ${project.parent.version}

opencv/pom.xml

science.aist.imaging:imaging 2.0.1-SNAPSHOT

science.aist.imaging:api ${project.parent.version}

science.aist.imaging:core ${project.parent.version}

openimaj/pom.xml

science.aist.imaging:imaging 2.0.1-SNAPSHOT

science.aist.imaging:api ${project.parent.version}

openjfx/pom.xml

science.aist.imaging:imaging 2.0.1-SNAPSHOT

science.aist.imaging:api ${project.parent.version}

org.openjfx:javafx-media 11

pdfbox/pom.xml

science.aist.imaging:imaging 2.0.1-SNAPSHOT

pom.xml

net.imagej:ij 1.53g

org.bytedeco:javacv 1.5.6

org.bytedeco:javacv-platform 1.5.6

org.orbisgis:jdelaunay 0.5.3

org.springframework:spring-beans 4.3.7.RELEASE

org.springframework:spring-core 4.3.7.RELEASE

org.springframework:spring-context 4.3.7.RELEASE

org.springframework:spring-web 4.3.7.RELEASE

org.springframework:spring-webmvc 4.3.7.RELEASE

com.fasterxml.jackson.core:jackson-core 2.7.9

com.fasterxml.jackson.core:jackson-databind 2.7.9

com.fasterxml.jackson.core:jackson-annotations 2.7.9

org.nd4j:nd4j-api 1.0.0-beta7

org.nd4j:nd4j-native 1.0.0-beta7

science.aist:aistcv 4.5.3

com.drewnoakes:metadata-extractor 2.13.0

org.openimaj:core-image 1.3.10

org.apache.pdfbox:pdfbox 2.0.14

org.apache.maven.plugins:maven-project-info-reports-plugin 3.0.0

org.apache.maven.plugins:maven-javadoc-plugin 3.1.1

javax.activation:activation 1.1.1

javax.xml.bind:jaxb-api 2.3.0

com.sun.xml.bind:jaxb-core 2.3.0

com.sun.xml.bind:jaxb-impl 2.3.0

org.projectlombok:lombok 1.18.10

org.springframework:spring-beans 4.3.7.RELEASE

org.springframework:spring-core 4.3.7.RELEASE

org.springframework:spring-test 4.3.7.RELEASE

org.springframework:spring-context 4.3.7.RELEASE

org.testng:testng 6.11

science.aist.seshat:api 1.1.0

science.aist:jack 2.3.1

org.hamcrest:hamcrest-all 1.3

org.mockito:mockito-core 3.11.1

org.apache.maven.plugins:maven-scm-publish-plugin 3.0.0

org.sonatype.plugins:nexus-staging-maven-plugin 1.6.8

org.apache.maven.plugins:maven-javadoc-plugin 3.1.1

org.apache.maven.plugins:maven-site-plugin 3.8.2

org.apache.maven.wagon:wagon-webdav-jackrabbit 3.3.4

org.apache.maven.doxia:doxia-module-markdown 1.9

org.apache.maven.plugins:maven-surefire-plugin 2.18.1

org.apache.maven.plugins:maven-gpg-plugin 1.6

org.apache.maven.plugins:maven-release-plugin 2.5.3

org.jacoco:jacoco-maven-plugin 0.8.4

org.apache.maven.plugins:maven-dependency-plugin 3.1.1

org.apache.maven.plugins:maven-surefire-plugin 2.18.1

org.sonarsource.java:sonar-jacoco-listeners 5.14.0.18788

tesseract/pom.xml

science.aist.imaging:imaging 2.0.1-SNAPSHOT

org.bytedeco.javacpp-presets:tesseract-platform 3.04.01-1.3

science.aist.imaging:api ${project.parent.version}

science.aist.imaging:core ${project.parent.version}

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ChannelType Scale Function

Add a Scale Function to the ChannelType which allows to scale a given value from a source range to a target range, which is defined by the ChannelType's min and max values.

public double scale(double value, int channel, double currentMin, double currentMax) {
  ...
}

This function could be reused in the ImageWrapper implementations of e.g. OpenIMAJ or OpenJFX, where images are represented with a range from 0 to 1 instead of 0 to 255 as in other frameworks.

Fix Face Recognition/Detection

Requires: FHOOEAIST/aistcv#5

Migrated from: https://aist.fh-hagenberg.at/git/Development/imaging/-/issues/260

Add Tensorflow support

D4J Module

Add a connection module to Deeplearning4j

Inspiration: deeplearning4j/deeplearning4j#9056

Extend mesh module

We could think of extending the mesh module by connecting to:

Clipper - For working with polygons
- Java Impl 1 (Angus Johnson V6.4.2)
- java Impl 2 (Angus Johnson V5.1.6)
Poly2Tri - For additional triangulation implementations

Add comparison to python/numpy

Describe the solution you'd like

Add a section to the readme that compares the performance of Imaging to Python/numpy to show the advantages of image processing in Java.

Mesh Module

Add a new module for mesh processing containing:

Mesh file reader/writer (stl, ply, obj, off)
Triangulation (Constrained Delaunay, ...)

Migrated from: https://aist.fh-hagenberg.at/git/Development/imaging/-/issues/290

Reference Papers that used the project

Fouriertransformation

Integrate fourier and inverse fourier transformation.
https://github.com/wuchubuzai/OpenIMAJ/blob/master/image/image-processing/src/main/java/org/openimaj/image/processing/algorithm/FourierTransform.java

Migrated from: https://aist.fh-hagenberg.at/git/Development/imaging/-/issues/289

Add JavaCV support

Add JavaFX support

Add support to JavaFX's Image class using the WritableImage class

    WritableImage wr =  new WritableImage(width, height);
    PixelWriter pw = wr.getPixelWriter();
    for (int x = 0; x < image.getWidth(); x++) {
       for (int y = 0; y < image.getHeight(); y++) {
          pw.setArgb(x, y, image.getRGB(x, y));
        }
    }

Can be converted to JavaFX's Image like:

new ImageView(wr).getImage();

Change dependency of seshat from 1.0.1 to 1.1.0

Seshat 1.1.0 implements a new concept on how the LoggerFactories are loaded, which has a significant lower loading time. Thus, we should upgrade to the newest version.

ImageWrapper createCopy - Comfort overload

Add a comfort overload for createCopy() to the ImageWrapper interface

default <X> ImageWrapper<X> createCopy(Class<X> targetClass) {
        return createCopy(ImageFactoryFactory.getImageFactory(targetClass);
}

Usage of Wrappers

Is your feature request related to a problem? Please describe.
Currently, we are using two architectural concepts in the imaging project:

Image processing: Interchangable Wrapper classes (e.g. ImageWrapper)
Geometry: Rich domain implementations (e.g. JavaPoint2D, JavaPolygon2D, ...)

Describe the solution you'd like
To have a more consistent architecture it would be great if we move the rich implementations of e.g. JavaPoint2D to the associated WrapperClasses.

Priority
Minor priority, would also need a new major version.

Release 1.2.0

Add Skija support

Add support to the Java bindings of Googles Skia project:
https://github.com/JetBrains/skija

Update to AistCV 4.5.3

Extend Readme - Multi Modul Example

Describe the solution you'd like
Extend the project readme by a multi modul example.
E.g. Loading an image with OpenCV, applying some OpenCV filter and further apply some API/OpenIMAJ/... filter.

Release V1.1

Release imaging 1.1

[BUG] GenericImageConsumer.accept() does not close copy

Describe the bug
The GenericImageConsumer currently does not close the temporarily created copy in accept.

To Reproduce
Have a look at https://github.com/FHOOEAIST/imaging/blob/main/api/src/main/java/science/aist/imaging/api/GenericImageConsumer.java#L50

Expected behavior
Close temporarily created copy.
Change to:

    @Override
    public void accept(ImageWrapper<I> iImageWrapper, T t) {
        if(iImageWrapper.getSupportedType().equals(consumerFactory.getSupportedType())){
            consumer.accept(CastUtils.cast(iImageWrapper), t);
        } else {
            ImageWrapper<I2> copy = iImageWrapper.createCopy(consumerFactory);
            try {
              consumer.accept(copy, t);
              copy.copyTo(iImageWrapper);
            } finally {
               copy.close();
            }
        }
    }

GenericImageFunction

Is your feature request related to a problem? Please describe.
The idea of the Imaging project is to create a framework overarching image processing pipeline and to connect different Java libraries. Currently, it is required to manually convert ImageWrapper's to the required type of a specifc implementation (especially if you use it over module borders). So add a functionality to overcome those borders.

Describe the solution you'd like
Add a generic image function implementation that wraps any given ImageFunction and converts the actual input to the wrapped function's input (if necessary). In addition to that the wrapped function's result is in turn converted to an expected output (if necessary).

The code could look something like (not tested!):

public class GenericImageFunction<I, O> implements ImageFunction<?, O> {

   public GenericImageFunction(ImageFunction<I, ?> function, Class<I> functionInputType, Class<O> outputType){
     this(function, ImageFactoryFactory.getImageFactory(functionInputType), ImageFactoryFactory.getImageFactory(outputType));
   }

   public GenericImageFunction(ImageFunction<I, ?> function, ImageFactory<I> functionInputFactory, ImageFactory<O> outputFactory) {
    ... // initialize variables
  }

   public ImageWrapper<O> apply(ImageWrapper<?> image) {
       ImageWrapper<I> input;
       if(image.getSupportedType().equals(functionInputFactory.getSupportedType())){
           input = (ImageWrapper<I>) image;
       } else {
           input = image.createCopy(functionInputFactory);
       }

      ImageWrapper<?> functionResult = function.apply(input);
      
      if(functionResult.getSupportedType().equals(outputFactory.getSupportedType())){
           return (ImageWrapper<O>) functionResult;
       } else {
           ImageWrapper<O> result = functionResult.createCopy(outputFactory);
           functionResult.close();  // close interim result
           return result;
       }
   }
}

Requires a getSupportedType Function in ImageWrapper (compare to ImageFactory)

public interface ImageWrapper<I> {
   ...
   Class<I> getSupportedType();
}

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