fiji/vib

vib's Issues

Mode "Voronoi" does nothing?

Hi,
I would have expected that Voronoi would output ROIs that correspond to the Voronoi surface around each point in the selection. However I do not see any output when selecting this mode, except a line in my results table...

Best

Oli

Threshold option (T) causes an exception

Hi guys,

I am currently experimenting with Fiji and I noticed that when I click on the T option after opening the Segmentation editor and making a selection, I obtain the following exception:

Hopefully this will be useful.

Cheers,

No finished update with export mesh, and no 0 mesh size check

I've been exporting some very large stacks as mesh and have had a couple issues with the Wavefront exporter. First, if the mesh list is of size 0, no error is produced (a 0 size mesh happened when I tried to use the max pixel value as the threshold value, I'm guessing a > is used somewhere instead of a >=). Second, there is no way to tell when the file has been fully exported as their is no dialog popup or showStatus update.

load 3D index image

Dear Segmentation editor developper, I like very much your program, thanks very much to have developped it . It is really what I was looking for with the interpolation in 3D ! The only point I will suggest to add is to be able to load an index image to create 3D ROIs inside. As a matter of fact sometimes, you just need to correct/add annotation from automatic segmentation (CellPose, StarDist,..). Thomas Boudier have done that functionnality with 3D ROI manager from 3D suite but infortunately in 3D Suite you cannot add new ROIs so both program could be great to use. Cheers, Mathieu

Error states 8/16/32/bit only, yet RGB works

As touched on here, an error message in this plugin states that only gray images are allowed, but in fact RGB also runs.

In line 59: "Images must be 8, 16 or 32-bit."