franek18/liquidbiopsycnn

Installation

First create a python3 virtual environment in the repository folder

python3 -m venv venv

activate the environment with commmand

source venv/bin/activate

and install requirements

pip install -r requirements.txt

Running

The main file is main.py. It has three arguments which can be set during running. These arguments are:

• model - type of model to train, by default it is VanillaCNN
• data - type of data's representation, default is standard (267x531)
• test - type of split of the data, by default it is hospital split

To run a training type

python main.py --model Resnet --data standard --test hospital