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gk-pilot

A pilot implementation of GKS Work Stream specifications.

gks-clinvar

A submission tool for submitting to the ClinVar Submission API using GA4GH GKS data

gks-common

Common classes and schemas used by all GKS specifications (ie. VR, VA, etc..)

gks-metaschema

Tools and scripts for parsing the GKS standards metaschemas

hackathon2016

Repository to track DWG hackathon 2016 projects

hgvs-lib

C-based library for manipulating HGVS-formatted variants

htsget

Python client for GA4GH htsget protocol

htsget-compliance

Compliance testing for htsget deployments

htsget-refserver

Reference server implementation for the GA4GH HTSget API standard.

htsget-refserver-utils

Helper utilities for the htsget reference server

htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

human-pangenome-project

Human Pangenome Project

large-scale-genomics-wiki

Homepage for the Large Scale Genomics Work Stream

machine-readable-consent-guidance

Machine Readable Consent Guidance

metadata-team

mme-apis

Documentation for the MatchmakerExchange APIs

product-process

quality-control-wgs

Home for the GA4GH Quality Control of Whole Genome Sequencing metrics and reference implementations

refget-client

Reference Sequence Fetcher : A client library in Python for Reference Servers

refget-cloud

AWS serverless implementation of the refget service

refget-compliance

Compliance reports for GA4GH refget implementations

refget-compliance-suite

Repository for the Google Summer of Code for the Reference Retrieval API

refget-loader

Schedule the processing of ENA sequences and upload to S3 public dataset

reverse-lookup-spec

This is the temporary, unofficial home for the Reverse Lookup draft specification

sa-spec

sequence annotation specification repository

schema-registry

Repository of schemas to be loaded by the schema registry API

schema-registry-api

Proof-of-concept data model library, hosts schemas across all GA4GH products

schema-registry-ui

Schema registry user interface layer

seqcol-spec

GA4GH Refget specifications docs

standards-schema

A schema for describing GA4GH Standards