Comments (44)
Hi all,
I'm so sorry we wanted to publish a nice writeup about this great event, but we are swamped with preparation for the Swiss/German Galaxy workshop here in Freiburg. I promise to get to this as soon as possible.... Many thanks to you all again! This was a great event and we hope to organize a similar event soon.
from training-material.
@stevekm please read the issue description at the top. I have tried to collect all information's there.
Moreover, there is no when
. People from all over the world will join and depending on the timezone this can vary a lot. Just join us on gitter and assign yourself to one of the https://github.com/bgruening/training-material/issues or contribute your own training material!
HFAWWF - (have fun and work with friends) :)
from training-material.
@friedue I kindly introduce you to @vipints! He knows TÜ!
@vipints I kindly introduce you to @friedue! She was in FR! ;)
from training-material.
Ok, I'll be there (on the 6th) and see to which topic(s) I can contribute :). Prior to the Hackathon could we list the topics we could address ?
from training-material.
I will join the hackathon as well. We have some training materials here: https://github.com/ErasmusMC-Bioinformatics/galaxy-courses, some of which we could maybe adapt/integrate here. And I can help out with the introduction, NGS, and RNA-seq topics in general as we teach those a lot ourselves too. And I could help out in dev-corner for tools/IEs/viz as well.
I would also like to see a metagenomics topic, I've started working on a galaxy training (following this repos' style) for the Mothur MiSeq SOP (http://www.mothur.org/wiki/MiSeq_SOP) with some additional visualisation steps (krona/phinch etc) ..and in the long term would like to add a training for qiime as well (but will need to work on the tools themselves first).
from training-material.
Hi @bebatut @bgruening and all Galaxy lovers, EnginesOn, @jennydg @fjrmoreews @yvanlebras, are insterested to participate to this new hackathon time! The objectives can be for us to improve the training tutorial for RAD-Seq and for Multi-QC developped by @yvanlebras and @cmonjeau. This will also be the opportunity for Jennifer, future leader of the company, to get involved in the community and get familiar with this type of event.....
@bgruening is your cookies sendable by ftp ;) ?
from training-material.
Hi @bebatut @bgruening! @devengineson will be represented by myself, with help from @yvanlebras, @fjrmorreews, @cmonjeau but I will probably not be able to cover the whole 2 days. I already know I won't be available tomorrow morning.
from training-material.
Hi all, I will try to join the hackathon both days with.
from training-material.
Hey, I will join both days as well! Can't wait for tomorrow =)
from training-material.
I'll join tomorrow and Friday. I'm Pacific US time, so will be on the tail end of both days.
from training-material.
also @friedue @vipints I am in NYC too let me know if there's a meetup for this
from training-material.
Thank you Björn and Bérénice for the amazing work to help us contribute in the best way!!!!!
I look forward to have time to finish a first complete version of the Stacks training material!!!!
Tscüss,
Yvan
----- Mail original -----
De: "Björn Grüning" [email protected]
À: "bgruening/training-material" [email protected]
Cc: "Yvan Le Bras" [email protected], "Mention"
[email protected]
Envoyé: Mardi 18 Octobre 2016 14:25:37
Objet: Re: [bgruening/training-material] Galaxy training contribution fest -
6-7th October (#58)Hi all,
I'm so sorry we wanted to publish a nice writeup about this great event, but
we are swamped with preparation for the Swiss/German Galaxy workshop here in
Freiburg. I promise to get to this as soon as possible.... Many thanks to
you all again! This was a great event and we hope to organize a similar
event soon.—
You are receiving this because you were mentioned.
Reply to this email directly, view it on GitHub , or mute the thread .
Yvan Le Bras, PhD @Yvan2935 <°))))><
e-Biogenouest project http://www.e-biogenouest.org
CNRS UMR 6074 IRISA-INRIA, Campus de Beaulieu, 35042 Rennes Cedex
tél.: +33 (0) 2 99 84 71 79 / +33 (0) 6.10.43.96.51
[email protected]
from training-material.
Cool beans - I'll try to work on galaxyproject/galaxy#2283 during this. I don't know how that would fit into your master plan but it is Markdown and HTML slides and important documentation - but it is not reveal.js though. The good part of the approach though is that it seems to fit into Sphinx well.
Maybe we should harmonize approaches.
from training-material.
sounds great! anybody in the New York City area who'd like to meet up for this?
from training-material.
@jmchilton sounds good. Currently we agreed upon reveal.js here: bgruening#8 But I think as everythin is markdown we can inter convert everything.
@friedue great you can join!
Anyone nearby Freiburg/Germany wants to join? Afaik @hrhotz will visit us on 6th to work with us in Freiburg and others are welcome too!
from training-material.
@vipints you are still in New York, aren't you? :)
from training-material.
Björn, Yeah I am still here in NYC :) Planning to join for the event virtually.
from training-material.
@friedue: I am in MSKCC
from training-material.
I this training material for using Galaxy, or setting up Galaxy?
from training-material.
@stevekm both. We have collected material for admins: https://github.com/bgruening/training-material/tree/master/Admin-Corner, Users and Developers.
from training-material.
Is there a formal step-by-step guide for Admins getting started with Docker and setting it up as a service? I looked through the items there, and have gone through the documentation in other places but so far haven't found a complete walk-through; had plans to write one myself once I figure it all out.
Also, I had issues with the link in the readme on that page, might need to change it to this? http://galaxy.slides.com/bgruening/the-galaxy-docker-project#/
from training-material.
@stevekm the link is working for me :( What do you see.
We have a lot of documentation about the Docker project here: https://github.com/bgruening/docker-galaxy-stable
I hope this helps.
from training-material.
@bgruening I think the live
part of the URL is trying to start a live session; for me it just hangs on the first slide trying to establish a connection to your account. The URL I listed shows the slides only.
The Docker doc's have been very useful but I've still had to pull together info from many other sources (e.g. Ansible playbooks) to get things configured; doc's for the other aspects weren't written in the context of using Docker so its been a little extra confusing to figure out how to piece everything together.
from training-material.
@stevekm are you using this Container or developing for it/with it? The latter is indeed not covered.
Happy to accept patches.
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Right now I am trying to get the Galaxy Docker set up as a service at my institution.
from training-material.
Hi! that's a pretty nice initiative! Have you spit up the 2 days into topics; I'd like to join but I can't join the two entire days.
from training-material.
@slegras great to see you here!
we haven't any topics, I thought everyone works on a specific training or that small groups working on a specific training over the two days. But I'm open for suggestions.
@stevekm let ma know if you get stuck and how we can improve our documentation.
from training-material.
how does an 'online contribution fest' work? Is there a website or physical location where people are meeting?
from training-material.
We will be on gitter/IRC as you like I will open an hangout and will start with a short presentation and what we are aiming for in this project. Then everyone can start gathering together in groups, get things done, ask questions, create PR, have fun to work together :)
from training-material.
As I already said, I'm in to contribute on the dev-corner
from training-material.
unfortunately, I won't be able to join in person in Freiburg on Thursday, but will try to do some work in the admin corner on Thursday/Friday
from training-material.
@hrhotz too bad! I ordered already cookies ;)
@shiltemann sounds wonderful!
I have updated the description above and added a organisation section.
from training-material.
@devengineson what can I say? Engine On! Let's rock the Galaxy training world!
from training-material.
@jennaj sure thing! The aim is to have fun and work with friends don't feel bad if you can not join :)
from training-material.
@bgruening I think there is a Jenni mistake ;) in your last message between @jennaj and @jennydg
I like your hfawwf (have fun and work with friends) concept !
from training-material.
Upps, you are right! @jennydg my bad sorry. hfawwf
!
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@gmauro great! See you tomorrow!
from training-material.
are there details up yet about how/when to join?
from training-material.
I posted this to Biostars in hopes of attracting some sci users. Hope Ok! https://biostar.usegalaxy.org/p/19971/
I'll also be joining during both days when I can. See you all there
from training-material.
@jennaj more than ok! Fantastic! Thanks!
from training-material.
Ok Europe we will start the contribution fest! :)
from training-material.
@stevekm Vipin and I will join tomorrow, I've booked a room at Weill Cornell for this (send me an email to frd2007 at med.cornell.edu to get the exact location, would be great to have you around, too!)
from training-material.
A little bit late but here is our summary!!!
https://docs.google.com/document/d/1pThnwvQKvdN1C0ub1QWoXcWp71QinZb_msUKHLFxfFI/pub
Thanks again!
from training-material.
very nice text! a big Thank you to @bebatut and @bgruening
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Related Issues (20)
- Feeds bug and extension HOT 4
- WorkflowHub image is missing ...
- Making content with markdown tutorial - Gitter to Matrix and Slack
- Creating a new topic relies on Planemo
- modification time plugin does not handle symlinked parent/grandparent directories
- display all short URLs somewhere for instructors/authors
- Something like \cref or just \ref for tutorial authors to reference figures etc.
- Lint for deprecated HTML elements like <tt>
- Explore alternative ways to do youtube embeds to decrease impact on users with low bandwidth available.
- Warning / linting for zero-width space used in contributing markdown tutorial
- Progress bar for Slide Decks HOT 1
- Add a proper contact, about page
- Add a nice sequence diagram for video submissions
- Identical workflows: cut & run / atac-seq HOT 2
- Workflow pages could set DC.creator
- improvements to by-tool pages HOT 1
- Incorrect chromosome naming in the ChIP-seq tutorial
- Suggested update to workflow for differential-isoform-expression HOT 2
- CYOA choice should update the agenda too
- Enable event listing on funders page
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