garywei944/fmol

A simplified drug discovery pipeline -- generating SMILE molecular with AlphaSMILES, predicting protein structure with AlphaFold, and checking the druggability with fpocket/Amber.

ariseus

Machine Learning	Full Stack	Game Development	Executable Exploitation
Researcher	Engineer	Gamer	Hacker

Hi GitHub! I'm Gary. I also go by the name ariseus online. I'm a master's student at Cornell University in Computer Science. My research interests lie at the intersection of machine learning systems, theory, and AI-driven scientific advancements, where I leverage my mathematical and engineering talents to pioneer cutting-edge solutions. I work at Cornell Relax ML Lab with Prof. Chris De Sa on efficient machine learning algorithms and systems. Our work, grounded in mathematical principles, aims to expedite large-scale, high-performance machine learning systems that are efficient, parallel, and distributed in real-world settings. Parallel to this, I collaborate on AI-driven molecule generation with talented Ph.D. students. I was working at UMass BioNLP lab on practical medical NLP projects.

I always depict myself as a combination of scientist and engineer. I studied General Computer Science and Computational and Applied Mathematics as an undergraduate. I do projects in Machine Learning, Full Stack websites, Serverless websites, Game programming, etc.

I'm a PROUD Arch Linux user but I'm not an extreme fundamentalist. Usually, I play around with all potential solutions and go for the best practice. I write compatible command line scripts. I care about writing well-structured high-performance reproducible machine learning projects. I also care about theoretical and mathematical foundations. I wanted to become a mathematician when I was a freshman.

I also do beginner-level exploitation and reverse engineering challenges. I enjoy solving CTF challenges and used to have fun with them.

I play League of Legends, play PC games, and watch anime. I really like the anime STEINS;GATE and my dream is to be a mad scientist.

我的母语是中文，I'm studying in US, 日本語も私の専攻です。

Fundamentalism

工欲善其事，必先利其器。
A handy tool makes a handy man.

• OS:
• Editors:
• Desktops:

• used to be my favorite editor. I have maintained a rich customized configuration at garywei944/eva_st4. Now I have moved to use VS Code for better official support.

Skilled Languages & Frameworks

Level / Category	Language / Framework
Developing with	Python, Bash
Proficient	C/C++, C#, Java, JavaScript, TypeScript
Experienced	Lua, MATLAB, R, Batch, Lisp, AppleScript
Machine Learning	PyTorch, Hugging Face, numpy, pandas, etc (mastered)
Front End	HTML, CSS(Bootstrap), JavaScript(jQuery), Ajax
Back End	Django, Express JS, PostgresSQL
Game Programming	Unity

Algorithm

I started to do algorithm competitions since high school. Now I solve problems on LeetCode.

Pragmatism

• Some Machine Learning in Biomedical NLP

  • I worked on Biomedical NLP projects with Prof. Hong Yu at UMass Lowell BioNLP Lab.

• Some Machine Learning in 3D Computer Vision

  

• Some Machine Learning in Drug Discovery

  

• Some Game Programming

  

• Full Stack Development, IoT, etc

  

• Exploitation, CTF Challenges

  

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Check out garywei.dev for more!

fmol's Issues

This project support only casp13 protein?

1. This project support casp protein only?
2. I want to use corona-19 protein.
3. What support protein this project?