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gavinwinner's Projects

phylocsf icon phylocsf

Phylogenetic analysis of multi-species genome sequence alignments to identify conserved protein-coding regions

primateai icon primateai

deep residual neural network for classifying the pathogenicity of missense mutations.

pywin32 icon pywin32

Python for Windows (pywin32) Extensions

readfq icon readfq

Fast multi-line FASTA/Q reader in several programming languages

reseqtools icon reseqtools

A Toolkit for analyzing next-generation DNA Re-Sequencing data

sambamba icon sambamba

Tools for working with SAM/BAM/CRAM data

strelka icon strelka

Strelka2 germline and somatic small variant caller

transvar icon transvar

TransVar - multiway annotator for precision medicine

vcf2maf icon vcf2maf

Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

wisecondor icon wisecondor

WISECONDOR (WIthin-SamplE COpy Number aberration DetectOR): Detect fetal trisomies and smaller CNV's in a maternal plasma sample using whole-genome data.

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