To rename the names of chromosomes in the VCF file.
Converting from NCBI naming convention of chromosomes to UCSC. For example, NC_000001.11 will change to chr1.
Software requirements: -> bcftools (https://github.com/samtools/bcftools/releases/tag/1.12)
To convert UCSC to NCBI names, simply change the map file in the renameCHR.sh to map_UCSC2NCBI.txt
Reference: https://hgdownload.cse.ucsc.edu/goldenpath/hg38/bigZips/hg38.chromAlias.txt