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RSA-chain-sequence-alignment

本题抽象为输入两个病毒的 RNA 个数和每一条 RNA 的碱基序列,进行相似性比较。

如:有两个不同病毒 A 和 B,A 病毒有 3 条 RNA 序列,分别为:①ACUUCG ②GUGAUAGACAC③AUGGAGA;B 病毒有 5 条 RNA 序列,分别为:①ACUAG ②GUGAUAGACAC ③AUCGUGUG④CCGUGGA ⑤CUAUGUG。在进行相似性比对时,需要对 A 病毒和 B 病毒的多条 RNA 进行匹配,如 A 病毒的 RNA①和 B 病毒的 RNA①进行匹配,这两条 RNA 匹配的得分由序列比对这两条 RNA 的碱基序列的方式得出。

需要寻找一个最优的匹配方式,使匹配的总得分最高,由这个得分代表两个病毒的相似度。

使用序列比对算法进行RSA链比对,性能一般,仅供参考。

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