Comments (1)
chrisamiller
commented on September 14, 2024
Not sure how to reproduce this - seems to work just fine on my macbook:
$ git clone [email protected]:genome/sciclone.git
Cloning into 'sciclone'...
remote: Counting objects: 929, done.
remote: Compressing objects: 100% (6/6), done.
remote: Total 929 (delta 2), reused 0 (delta 0), pack-reused 923
Receiving objects: 100% (929/929), 14.12 MiB | 3.84 MiB/s, done.
Resolving deltas: 100% (478/478), done.
Checking connectivity... done.
$ R CMD build sciclone
* checking for file ‘sciclone/DESCRIPTION’ ... OK
* preparing ‘sciClone’:
* checking DESCRIPTION meta-information ... OK
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building ‘sciClone_1.1.0.tar.gz’
$ R CMD INSTALL sciClone_1.1.0.tar.gz
* installing to library ‘/Library/Frameworks/R.framework/Versions/3.3/Resources/library’
* installing *source* package ‘sciClone’ ...
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (sciClone)
from sciclone.
Related Issues (20)
- Description for [email protected] HOT 2
- Where to download these 3 input files? HOT 1
- 2D plot doesn't show all clusters HOT 10
- Question about 3d plot
- sc.plot2dWithMargins Error HOT 3
- Backfilling ref and alt depth for variants only detected in one sample of multi-sample clustering HOT 1
- How to classify subclone frome sciClone result ? HOT 4
- Input purity dara HOT 1
- Can I still use sciclone? HOT 4
- Question about sciclone output HOT 1
- Too few clusters HOT 1
- Topological tumour samples HOT 1
- How to get five columns of vaf data for sciclone HOT 1
- Structural variants as input to sciclone HOT 3
- can't do clustering - no copy number 2 regions to operate on in sample 15 HOT 2
- Application on targeted NGS data HOT 1
- Cannot install NORMT3 HOT 4
- Error in xtfrm.data.frame(x) HOT 4
- How to distinguish between clones and subclones HOT 2
- Question about the result of sciclone HOT 2
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from sciclone.