gfinak/bioc2015opencyto

BioC 2015 OpenCyto workshop R package

bioc2015opencyto's Issues

Failure to install

Hi,
I tried to install the package, but failed.
I think the problem lies on the missing .nc file in the extdata folder.

I would appreciate any tips on how to make it work.

Best,
Thanasis

library(devtools)
install_github("gfinak/BioC2015OpenCyto")
Downloading GitHub repo gfinak/BioC2015OpenCyto@master
from URL https://api.github.com/repos/gfinak/BioC2015OpenCyto/zipball/master
Installing BioC2015OpenCyto
'/Library/Frameworks/R.framework/Resources/bin/R' --no-site-file --no-environ --no-save --no-restore
--quiet CMD INSTALL
'/private/var/folders/l_/n_211gls1c3961p8t00sc3y00000n5/T/Rtmpkg9Nfc/devtools10065187dea82/gfinak-BioC2015OpenCyto-f8183af'
--library='/Users/tmargaritis/Library/R/3.3/library' --install-tests

During startup - Warning messages:
1: Setting LC_CTYPE failed, using "C"
2: Setting LC_TIME failed, using "C"
3: Setting LC_MESSAGES failed, using "C"
4: Setting LC_MONETARY failed, using "C"

• installing source package 'BioC2015OpenCyto' ...
  ** R
  ** data
  ** inst
  ** preparing package for lazy loading
  Warning: package 'ggcyto' was built under R version 3.3.1
  Warning: package 'ggplot2' was built under R version 3.3.2
  Warning: package 'BH' was built under R version 3.3.2
  Warning: package 'flowWorkspace' was built under R version 3.3.1
  ** help
  *** installing help indices
  ** building package indices
  loading R object...
  loading tree object...
  Error in .load_gs(output = path, files = files) :
  .nc file missing in /Users/tmargaritis/Library/R/3.3/library/BioC2015OpenCyto/extdata/tbdata
  ERROR: installing package indices failed
• removing '/Users/tmargaritis/Library/R/3.3/library/BioC2015OpenCyto'
  Error: Command failed (1)

R.version
_
platform x86_64-apple-darwin13.4.0
arch x86_64
os darwin13.4.0
system x86_64, darwin13.4.0
status
major 3
minor 3.0
year 2016
month 05
day 03
svn rev 70573
language R
version.string R version 3.3.0 (2016-05-03)
nickname Supposedly Educational