The gnparser's discuss from gnames

Currently test-data.txt file contains about 500 tests, but they show as one test. I think I can use table test framework from ginkgo to break them into separate tests.

As a Developer I want to have a tool that allows me to rebuild test file completely.

created by @dimus at https://gitlab.com/gogna/gnparser/-/issues/21

It is useful if we need to change output format, or find a bug that affects many tests.

Add REST API and a web server

created by @dimus at https://gitlab.com/gogna/gnparser/-/issues/33

Port web server from Scala gnparser to Go gnparser

Cover names where combination authorship is missing one parenthesis

created by @dimus at https://gitlab.com/gogna/gnparser/-/issues/40

Aus bus (Auth
Aus bus Auth)
Aus bus (Auth 1888 Auth2

As a User I want the output to be in a more logical order of items.

created by @dimus at https://gitlab.com/gogna/gnparser/-/issues/25

CamelCase normalize rule names

created by @mjy at https://gitlab.com/gogna/gnparser/-/issues/26

As a developer I want to see rule names in grammar.peg names the same way.

output for open taxonomy

created by @dimus at https://gitlab.com/gogna/gnparser/-/issues/12

AST for open taxonomy

created by @dimus at https://gitlab.com/gogna/gnparser/-/issues/11

BOLD surrogates output

created by @dimus at https://gitlab.com/gogna/gnparser/-/issues/14

Write documentation in the code and README

created by @dimus at https://gitlab.com/gogna/gnparser/-/issues/30

As a gRPC User I want to get data back in the same order it is given if speed is sufficient

created by @dimus at https://gitlab.com/gogna/gnparser/-/issues/35

Push creating syntax tree until hybrids

created by @dimus at https://gitlab.com/gogna/gnparser/-/issues/4

Add 'ranked output' to gRPC

created by @dimus at https://gitlab.com/gogna/gnparser/-/issues/32

We had a one day internal hackathon and came up with a format that would be useful for taxonworks and probably for some other projects. It has more flattened format that is mostly ranks for genus, species, var, form, etc. Now I need to make a gRPC method for it and add this format to gnparser Ruby gem

Remove multiple years for simplicity sake

created by @dimus at https://gitlab.com/gogna/gnparser/-/issues/23

It is very rare when a name-string has more than 1 year. I am going to remove multiple year output

Add explanation for canonical form different uses for 'simple' and 'full' canonical forms.

created by @dimus at https://gitlab.com/gogna/gnparser/-/issues/44

AST up to open taxonomy

created by @dimus at https://gitlab.com/gogna/gnparser/-/issues/9

"Pereskia subg. Maihuenia Philippi ex F.A.C.Weber, 1898" should be parsed with subg. rank

created by @dimus at https://gitlab.com/gogna/gnparser/-/issues/46

Pereskia subg. Maihuenia Philippi ex F.A.C.Weber, 1898 means that subgenus Maihuenia is included into
genus Pereskia.

We need to add subg. as a rank for non-species "binomials" and then the canonical form for this name
should be Maihuenia instead of Pereskia

GlobalNamesArchitecture/gnparser#456

As a User I want to use html-cleaning and underscore substitution to spaces in my workflow as an option

created by @dimus at https://gitlab.com/gogna/gnparser/-/issues/37

I will experiment here and try to add underscore to the parser itself. If all goes well, there will be cleaning task that will only for on removing html tags and html entities from names for now.

Output for hybrids

created by @dimus at https://gitlab.com/gogna/gnparser/-/issues/7

Support agamosp. agamossp. agamovar. ranks

created by @dimus at https://gitlab.com/gogna/gnparser/-/issues/27

Add html entities and tags normalization

created by @dimus at https://gitlab.com/gogna/gnparser/-/issues/34

Create a docker image and publish it for every new release

created by @dimus at https://gitlab.com/gogna/gnparser/-/issues/29

As a User I want to use pipes for parsing names

created by @dimus at https://gitlab.com/gogna/gnparser/-/issues/41

It is often useful in command line environment to chain different processes together with pipes. Currently parser supports only one name parsing, which is pretty useless. I want to be able to do something like:

gnparser -c durty_names.txt | gnparser -f pretty -j 300 > result.txt

As a User I want flexibility in docker image, so I can use it either as a REST service, or gRPC service

created by @dimus at https://gitlab.com/gogna/gnparser/-/issues/38

As a User I want to make sure that parser works reliably and creates expected results.

created by @dimus at https://gitlab.com/gogna/gnparser/-/issues/22

Output for bacteria

created by @dimus at https://gitlab.com/gogna/gnparser/-/issues/16

output up to open taxonomy

created by @dimus at https://gitlab.com/gogna/gnparser/-/issues/10

Follow transliteration of non-ascii characters as well as reasonably possible

created by @dimus at https://gitlab.com/gogna/gnparser/-/issues/48

ICN
60.6. Diacritical signs are not used in scientific names. When names (either new or old) are drawn from words in which such signs appear, the signs are to be suppressed with the necessary transcription of the letters so modified; for example ä, ö, ü become, respectively, ae, oe, ue; é, è, ê become e; ñ becomes n; ø becomes oe; å becomes ao. The diaeresis, indicating that a vowel is to be pronounced separately from the preceding vowel (as in Cephaëlis, Isoëtes), is a phonetic device that is not considered to alter the spelling; as such, its use is optional. The ligatures -æ- and -œ-, indicating that the letters are pronounced together, are to be replaced by the separate letters -ae- and -oe-.

ICZN
32.5.2.1. In the case of a diacritic or other mark, the mark concerned is deleted, except that in a name published before 1985 and based upon a German word, the umlaut sign is deleted from a vowel and the letter "e" is to be inserted after that vowel (if there is any doubt that the name is based upon a German word, it is to be so treated).

We need to decide on a 'less harmful' approach here.

GlobalNamesArchitecture/gnparser#413

Sanctioning authors not parsed

created by @dimus at https://gitlab.com/gogna/gnparser/-/issues/47

Fungal names often have a sanctioning author (Fr. or Pers.) following a colon after the basionym or combination authorship. This is currently unparsed.

Example: Boletus versicolor L. : Fr.
ICNfap Article 50: http://www.iapt-taxon.org/nomen/main.php?page=r50E&emph=sanctioned
https://en.wikipedia.org/wiki/Sanctioned_name

GlobalNamesArchitecture/gnparser#409

Add newick format normalization (changing underscores to spaces)

created by @dimus at https://gitlab.com/gogna/gnparser/-/issues/36

As a User I want to use parser as a library from other languages.

created by @dimus at https://gitlab.com/gogna/gnparser/-/issues/24

Implement gRPC service

gnames / gnparser Goto Github PK

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