gobbios/bamoso

Bayesian modelling of animal social interactions

bamoso

Bayesian modelling of animal social interactions

Installation

You need cmdstanr in order to install and run bamoso. This in turn requires a working C++ toolchain first. Check out the getting started-guide from cmdstanr to see how to get everything set up properly. Also this document might be helpful.

Then install cmdstanr.

install.packages("cmdstanr", repos = c("https://mc-stan.org/r-packages/", getOption("repos")))

And you also need the remotes packages, which is easy to install from CRAN:

install.packages("remotes")

Then check whether things are set up correctly:

library(cmdstanr)
check_cmdstan_toolchain(fix = TRUE)

You may need to follow any instructions that the output of that call gives. If you haven't used cmdstanr before, it's likely that you at least need to install cmdstan itself:

cmdstanr::install_cmdstan()

If this gives positive feedback, install bamoso:

library(remotes)
remotes::install_github("gobbios/bamoso", dependencies = TRUE, build_vignettes = FALSE)

If you want to install (recompile) the intro vignette, use:

install.packages("tinytex")
library(remotes)
remotes::install_github("gobbios/bamoso", dependencies = TRUE, build_vignettes = TRUE)

This will take a little more time to finish, but if successful gives you access to the vignette:

vignette("intro", package = "bamoso")