QV for each ccs reads

[Wenfei-Xian]

QV for each ccs reads

[kishwarshafin]

Hello @Wenfei-Xian ,

Really sorry for such a late reply. We had a long chat about what exactly to do to support this. Finally, we have decided to provide a command line option to filter reads at any given Q-point.

With the latest DeepConsensus release of 1.2.0 you can run:

deepconsensus filter_reads --help

Filter reads based on the base qualities.
Flags:
    --input_seq            Path to input fastq or bam file.
    --output_fastq         Path to output fastq file.
    --quality_threshold    A quality threshold value applied per read.  Reads with read quality below this will be filtered out.

And see the option to filter your fastq at any given q-value. Please give it a try.

[Wenfei-Xian]

Many thanks !!!!!