Comments (1)
akolesnikov
commented on June 8, 2024
Hi @fergsc,
There are two batch parameters: --batch_zmws and --batch_size. --batch_size controls how many examples are processed in one call to the TensorFlow model. You may try that to increase the load on GPU.
--batch_zmws controls how many ZMWs are processed at a time. For each ZMW batch preprocess and inference steps are called sequentially. --cpus flag controls how many processes are used for preprocessing step. This flag does not affect the inference (run on GPU) part.
from deepconsensus.
Related Issues (20)
- Lower number of >Q30 average quality reads for v1.1 compared to v0.3 HOT 10
- Error detecting params.json using docker in debian (10) HPC HOT 2
- Installation from source file problem HOT 2
- lower quality and less reads in deepconsensus 1.0 output compared to ccs HOT 2
- python 3.9 HOT 2
- [Repeat] Running deepconsensus results in "free(): invalid pointer" error HOT 17
- QV for each ccs reads HOT 2
- Public raw train dataset availability HOT 2
- Cannot open/create ccs.bam file? HOT 6
- the label without alignment HOT 5
- bam or fastq issue HOT 2
- Separate subreads for mixed samples? HOT 3
- GPU installation failure with pip HOT 3
- GPU installation using quick start guide fails HOT 5
- OSError: error -3 while reading file HOT 8
- normal pass / fail rate? HOT 2
- KeyError HOT 5
- About making ground truth. HOT 2
- Optimizing runtime on HPC HOT 2
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from deepconsensus.