greenelab Goto Github PK

eslint-config-greenelab

ESLint config for React applications

finish-that-manuscript

Ten quick tips to finish that manuscript that's 90% complete.

gbm_immune_validation

Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors

gcb535

Materials for GCB535 at Penn.

gcb535challenge

We play a prediction game in our GCB 535 class. The class aims to teach students, primarily biologists, about machine learning methods and their use. This repository hosts the challenge for individuals outside of our lab.

gea_community_detection

Overrepresentation analysis for KEGG and PID pathways using community detection

generalization-manuscript

generic-expression-patterns

Distinguishing between generic and experiment-specific gene expression signals.

greedy-geneset-selection

Source code associated with "Leveraging global gene expression patterns to predict expression of unmeasured genes"

greenblack

Does green OA via preprinting reduce Sci-Hub usage?

greene_rotation_project

Code used for pseudobulks, BuDDi and data processing during Greene lab rotation

greenelab.com

The website source code for greenelab.com

hclust

Agglomerative hierarchical clustering in JavaScript

hetontology

Biological ontologies as hetnets in Neo4j

hgsc_rnaseq_cluster

hgsc_rnaseq_clustering_pipeline

hgsc_subtypes

Two or three subtypes of high grade serous ovarian cancer subtypes fit data from different populations better than four

hgsoc_deconvolution

indices

Evaluating citation indices

indices_app

The code for the web app for https://github.com/greenelab/indices

indices_manuscript

iscb-diversity

Analyzing diversity of ISCB keynote speakers & fellows compared to the field of bioinformatics

iscb-diversity-manuscript

Analysis of ISCB Fellows and Keynotes Reveals Disparities

jake_dissertation

kegg_geneset

Biothings data plugin for KEGG genesets

knowledge-graph-review

A literature review for constructing and using knowledge graphs in a biomedical setting.

lab-website-template

An easy-to-use, flexible website template for labs.

lab-website-template-docs

GitBook documentation for Lab Website Template

library-access

Collecting data on whether library access to scholarly literature

lincs_latent_space

Training VAE on LINCS dataset.